View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_16 (Length: 388)
Name: NF8477_low_16
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 84 - 380
Target Start/End: Original strand, 21032595 - 21032890
Alignment:
| Q |
84 |
caaaattgaatcatttcattgcaactgattcaatatcaattctaaattgtgtataacatattaacctaagagtttaattgtcatatgcttaattttatgt |
183 |
Q |
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| T |
21032595 |
caaaattgattcatttcattgcaactgattcaatatcaattctaaattgtgtataacatattaacctaagagtttaattgtcatatgcttaattttatgt |
21032694 |
T |
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| Q |
184 |
tagtataaaactgttttacacgaacaatccatatgtactctaattcgttaaacatattatttatactcgcgatttcattgacttgtcac-gatgtttgaa |
282 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21032695 |
tagtataaaactgttttacacgaacaatcc--atgtactctaattcgttaaacataatatttatactcgcgatttcattgacttgtcacagatgtttgaa |
21032792 |
T |
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| Q |
283 |
ttgcaagaatatacaagaaaatctaaaaccaagttgtggactggatactgtccgatggagcttccggcaaactctccatctattacataattcttctc |
380 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21032793 |
ttgcaagaatatacaaaaaattctaaaaccaagttgtggactggatactgtccgatggagcttccggcaaactctccatctgttacataattcttctc |
21032890 |
T |
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