View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_18 (Length: 371)
Name: NF8477_low_18
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 39 - 370
Target Start/End: Original strand, 32626758 - 32627089
Alignment:
| Q |
39 |
aaccaaaaatgttcttgctcatgatcttttagtcaataatatggtgatattgatgaacctagttctctctttagagtttcgatcggttaaatatttttta |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32626758 |
aaccaaaaatgttcttgctcatgatcttttagccaataatatggtgatattgatgaacttagttctccctttagagtttcgatcggttaaatatttttta |
32626857 |
T |
|
| Q |
139 |
tagcggttaaaaatctctttaacaacaccttcaccaaaatgactaactagcaaaggttcagccaaagctctcatgcattgtgccacatagtatccatcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32626858 |
tagcggttaaaaatctctttaacaacaccttcaccaaaatgactgactagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccatcat |
32626957 |
T |
|
| Q |
239 |
ctccgaatgattcagattcaaaatcatcacgagcattccaattcacttcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32626958 |
ctccgaatgattcagattcaaaatcatcacgagcattccaattcacttcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaa |
32627057 |
T |
|
| Q |
339 |
tttcacttcagatggagatggataatatatag |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32627058 |
tttcacttcagatggagatggataatatatag |
32627089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 32702662 - 32702737
Alignment:
| Q |
163 |
acaccttcaccaaaatgactaac---tagcaaaggttcagccaaagctctcatgcattgtgccacatagtatccat |
235 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| ||| || |||||||||||||||| |||||||| |
|
|
| T |
32702662 |
acaccttcaccaaaatgactaaccaacaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
32702737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 7292132 - 7292180
Alignment:
| Q |
167 |
cttcaccaaaatgactaactagcaaaggttcagccaaagctctcatgca |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
7292132 |
cttcaccaaagtgactaactagcaaaggttcaaccacagctctaatgca |
7292180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 32708710 - 32708758
Alignment:
| Q |
312 |
aaatgatccttcagtaataacttccaatttcacttcagatggagatgga |
360 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||| |||||||||||| |
|
|
| T |
32708710 |
aaatgatccttctttgagaacttccaatttcacttccgatggagatgga |
32708758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 39 - 365
Target Start/End: Original strand, 27735763 - 27736113
Alignment:
| Q |
39 |
aaccaaaaatgttcttgctcatgatcttttagtcaataatatggtgatattgatgaacctagttctctctttagagtttcgatcggttaaatatttttta |
138 |
Q |
| |
|
||||||||||||| ||||||| | | || | ||||| |||||| | | |||| ||||| ||||| ||||||| || | ||||| |||||| |||| || |
|
|
| T |
27735763 |
aaccaaaaatgtttttgctcaaggttttcttgtcaacaatatgctaagattggtgaacttagttttctctttggacatccgatcagttaaaatttttcta |
27735862 |
T |
|
| Q |
139 |
tagcggttaaaaatctctttaacaacaccttcaccaaaatgactaactagcaaaggttcagccaaagctctcatgcattgtgccacatagtatccatcat |
238 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| || ||||||||||| |
|
|
| T |
27735863 |
tagcggtcaaaaatctctgtaatgacaccttcaccaaagtgactaactagcaaaggttcagccacagccctaatgcattgtgccatattgtatccatcat |
27735962 |
T |
|
| Q |
239 |
ctccgaatga---------ttcagattcaa---------------aatcatcacgagcattccaattcacttcagatatctcgagttgattcatgacaaa |
314 |
Q |
| |
|
||| || ||| ||||||||||| |||||||| ||||||||||||| |||||||| | ||| | || ||| |||||||| |
|
|
| T |
27735963 |
ctctgagtgattctgacatttcagattcaaagtcaaaggcattacaatcatcaagagcattccaattaacttcagaaacctccaatttattgatgacaaa |
27736062 |
T |
|
| Q |
315 |
tgatccttcagtaataacttccaatttcacttcagatggagatggataata |
365 |
Q |
| |
|
|||||||||| | | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27736063 |
tgatccttcattgagaacttccaacttcacttcagatggagatggataata |
27736113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 5810560 - 5810662
Alignment:
| Q |
136 |
ttatagcggttaaaaatctctttaacaacaccttcaccaaaatgactaactagcaaaggttcagccaaagctctcatgcattgtgccacatagtatccat |
235 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||| || |||||||||||||||| |||||||| |
|
|
| T |
5810560 |
ttatagcgattaaaaatctctttaatgacaccttcaccaaagtgactagctagcaaaggttcagccacagcccttatgcattgtgccacattgtatccat |
5810659 |
T |
|
| Q |
236 |
cat |
238 |
Q |
| |
|
||| |
|
|
| T |
5810660 |
cat |
5810662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 20117989 - 20117931
Alignment:
| Q |
307 |
atgacaaatgatccttcagtaataacttccaatttcacttcagatggagatggataata |
365 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20117989 |
atgacaaatgacccttcagttagaacttccaatttcacttcagttggagatggataata |
20117931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 21941687 - 21941752
Alignment:
| Q |
133 |
tttttatagcggttaaaaatctctttaacaacaccttcaccaaaatgactaactagcaaaggttca |
198 |
Q |
| |
|
||||||||||||||||| | ||||| | |||||||||||||||||||||| |||||||||||| |
|
|
| T |
21941687 |
tttttatagcggttaaatacctcttcagtcacaccttcaccaaaatgactaataagcaaaggttca |
21941752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University