View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_19 (Length: 371)
Name: NF8477_low_19
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 49 - 354
Target Start/End: Complemental strand, 42667865 - 42667558
Alignment:
| Q |
49 |
ttattattctcatagggacgtgtattttttaatactagagatcttgatgttgagttaaatgtgtaccgggtactcaatttaactctatata--atctatt |
146 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42667865 |
ttattattttcatagggacgtgtattttttaatactaaagatcttgatgttgagttaaatgtgtaccgggtactcaatttaactctatatataatctatt |
42667766 |
T |
|
| Q |
147 |
ttattacaccttacgaattggcttactaactactagtggtaccaacgtacaactgcacaacttgcttcaaaagaaagctatttcatgttatccatttaat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42667765 |
ttattacaccttacgaattggcttactaactactagtggtaccaacgtacaactgcacaacttgcttcaaaagaaagctatttcatgttatccatttaat |
42667666 |
T |
|
| Q |
247 |
aaacatcaatagtatgtgcacgttattcatatgatatgatgttagttaaatatatatttttcaaatgataaaaaagaaacatacattctaatcaagaatc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42667665 |
aaacatcaatagtatgtgcacgttattcatatgatatgatgttagttaaatatatatttttcaaatgataaaaaagaaacatacattctaatcaagaatc |
42667566 |
T |
|
| Q |
347 |
tacaaata |
354 |
Q |
| |
|
|| ||||| |
|
|
| T |
42667565 |
taaaaata |
42667558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University