View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_21 (Length: 350)
Name: NF8477_low_21
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_21 |
 | |
|
| [»] scaffold0038 (4 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 28180505 - 28180171
Alignment:
| Q |
1 |
gataagataaggaaaatttcattggtgtgtggttaatttggtgggtcactcaaaaccgtgttttgttggaaatatttcattgtcaatgacaattccattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28180505 |
gataagataaggaaaatttcattggtgtgtggttaatttggtgggtcactcaaaaccgtgttttgttggaaatatttcattgtcaatgacaattccattg |
28180406 |
T |
|
| Q |
101 |
ggtaagatgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaatatttataaggataatctataaaattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28180405 |
ggtaagatgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaatatttatatggataatctataaaattga |
28180306 |
T |
|
| Q |
201 |
aaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggtttagattaattagactataatgtaaaatctactcgaaatatgttc |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28180305 |
aaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggttcagattaattagactataatgtaaaatctactcgaaatatgttc |
28180206 |
T |
|
| Q |
301 |
accaatctatgccagactgcctccaatgttgaatt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28180205 |
accaatctatgccagactgcctccaatgttgaatt |
28180171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 28242047 - 28241900
Alignment:
| Q |
153 |
cattatttgaaactgagaaatatttataaggataat--ctataaaattgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28242047 |
cattatttgaaactgagaaatatttataagcatattaactataaagttgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
28241948 |
T |
|
| Q |
251 |
atggtttagatta--attagactataatgtaaaatctactcgaaatat |
296 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||| || ||||||| |
|
|
| T |
28241947 |
atggttcagattattattagactataaagtaaaatcttcttgaaatat |
28241900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 28149014 - 28148926
Alignment:
| Q |
54 |
aaccgtgttttgttggaaatatttcattgtcaatgacaattccattgggtaagatgttctcttagcattatcatcaattttcaatcattgaa |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28149014 |
aaccgtgttttgttggaaatatttcattgtca---tcgattccattgggtaagctgttctcatagcattatcatcaattttcaatcattgaa |
28148926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 28242122 - 28242056
Alignment:
| Q |
41 |
gtgggtcactcaaaaccgtgttttgttggaaatatttcattgtcaatgacaattccattgggtaaga |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28242122 |
gtgggtcactcaataccgtgttttgttggaaaaatttcattgtcaatgacaattccattgggtaaga |
28242056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 28225097 - 28225040
Alignment:
| Q |
197 |
ttgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggt |
255 |
Q |
| |
|
|||||||||| ||||| | || |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28225097 |
ttgaaaatatcaagaatcatg-aatctagtctaacataaatatcaaagtagcaaatggt |
28225040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 28224995 - 28224958
Alignment:
| Q |
298 |
ttcaccaatctatgccagactgcctccaatgttgaatt |
335 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
28224995 |
ttcaacaatctatgcaagactgcctccaatgttgaatt |
28224958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 42209 - 42062
Alignment:
| Q |
153 |
cattatttgaaactgagaaatatttataaggataat--ctataaaattgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42209 |
cattatttgaaactgagaaatatttataagcatattaactataaagttgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
42110 |
T |
|
| Q |
251 |
atggtttagatta--attagactataatgtaaaatctactcgaaatat |
296 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||| || ||||||| |
|
|
| T |
42109 |
atggttcagattattattagactataaagtaaaatcttcttgaaatat |
42062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 42284 - 42218
Alignment:
| Q |
41 |
gtgggtcactcaaaaccgtgttttgttggaaatatttcattgtcaatgacaattccattgggtaaga |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42284 |
gtgggtcactcaataccgtgttttgttggaaaaatttcattgtcaatgacaattccattgggtaaga |
42218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 25595 - 25538
Alignment:
| Q |
197 |
ttgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggt |
255 |
Q |
| |
|
|||||||||| ||||| | || |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25595 |
ttgaaaatatcaagaatcatg-aatctagtctaacataaatatcaaagtagcaaatggt |
25538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 25493 - 25456
Alignment:
| Q |
298 |
ttcaccaatctatgccagactgcctccaatgttgaatt |
335 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
25493 |
ttcaacaatctatgcaagactgcctccaatgttgaatt |
25456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 58778 - 58905
Alignment:
| Q |
108 |
tgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaatatttataaggata--atctataaaattgaaaata |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
58778 |
tgttctcatagcattatcatcaattttcaatcattgaagacgt-acattatttgaaactgataaatatttataagcatataatctataaaattgaaaata |
58876 |
T |
|
| Q |
206 |
tgaagaaccgtgcaatctagtctaacata |
234 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
58877 |
tcaagaaccgtgcaatctagtctaacata |
58905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University