View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_23 (Length: 346)
Name: NF8477_low_23
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 18373855 - 18373649
Alignment:
| Q |
18 |
aagaaaaacatttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18373855 |
aagaaaaacatttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagat |
18373756 |
T |
|
| Q |
118 |
acatgcctatctgtcatcatcatggagtttttgacctttgaaaacaaaatggtttagaatgtactgatgattctcctacctgactttaaattgtgttcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
18373755 |
acatgcctatctgtcatcatcatggagtttttgacctttggaaacaaaatggtttagaatgtactatagattctcttacctgactttaaattgtgttcta |
18373656 |
T |
|
| Q |
218 |
aggctgc |
224 |
Q |
| |
|
||||||| |
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|
| T |
18373655 |
aggctgc |
18373649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 46639177 - 46639379
Alignment:
| Q |
18 |
aagaaaaacatttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagat |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46639177 |
aagaaaaatatttcaatggagatggtagtgttagctagatatttgt--gccaattggttaagttaaagagtagaagtcaatagttattttcttttaagat |
46639274 |
T |
|
| Q |
118 |
acatgcctatctgtcatcatcatggagtttttgacctttgaaaacaaaatggtttagaatgtactgatgattctcctacctgactttaaattgtgttcta |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
46639275 |
acatgcct--ctgtcatcatcatggagtttttgacctttgaaaacaaaatggtttagaatgtactgatggttgtcctacctgactttaaattgtgttcta |
46639372 |
T |
|
| Q |
218 |
aggctgc |
224 |
Q |
| |
|
||||||| |
|
|
| T |
46639373 |
aggctgc |
46639379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 46620443 - 46620628
Alignment:
| Q |
38 |
gatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagatacat--gcctatctgtcatc |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| || |||||||| || |
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| T |
46620443 |
gatggtggtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagtgatttattttgaagatacatatgcatatctgtcgtc |
46620542 |
T |
|
| Q |
136 |
atcatggagtttttgacctttgaaaacaaaatggtttagaatgtactgatgattctcctacctgactttaaattgtgttctaaggctgc |
224 |
Q |
| |
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|| ||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
46620543 |
at---ggagtttctgacctttggatacaaaatggtttagaatgtactgatggttctcctacctgactttaaattgtgttctaaggctgc |
46620628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 46630956 - 46631159
Alignment:
| Q |
18 |
aagaaaaacatttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagat |
117 |
Q |
| |
|
||||||| ||||| ||||||| ||||| | |||||| ||||||||||| | |||||||||||||||||||||||||||| ||| | | ||||||| | |
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|
| T |
46630956 |
aagaaaagcatttgaatggaggtggtaaaggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagct |
46631055 |
T |
|
| Q |
118 |
acatgcctatctgtcatcatcatggagtttttgacctttgaaaacaaaatggtttagaatgtactgatgattctcctacctgactt-taaattgtgttct |
216 |
Q |
| |
|
|| || ||||||| |||||||||||||| |||| ||| ||||||| |||||| ||||||| |||| | ||| | ||| |||| |||||||||||| |
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|
| T |
46631056 |
acctg-ctatctg---tcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgatgctcctcttgccttacttgcaaattgtgttct |
46631151 |
T |
|
| Q |
217 |
aaggctgc |
224 |
Q |
| |
|
|| ||||| |
|
|
| T |
46631152 |
aaagctgc |
46631159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 46172827 - 46172741
Alignment:
| Q |
18 |
aagaaaaacatttcaatggagatggtagt---gttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagt |
101 |
Q |
| |
|
||||||| ||||| | ||||||||||||| || ||||| |||||||||||||| |||||||||||||||| ||||| |||||||| |
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|
| T |
46172827 |
aagaaaagcatttgattggagatggtagtagtgtcagctaaatatttgcaagccacttggttaagttaaagaatagagatcaatagt |
46172741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 46172693 - 46172620
Alignment:
| Q |
154 |
tttgaaaacaaaatggtttagaatgtactgatgattctcctacctgacttt-aaattgtgttctaaggctgcta |
226 |
Q |
| |
|
|||| ||||||| ||| || |||||| | |||| ||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
46172693 |
tttggaaacaaattggctttgaatgtgccgatgcttctcctgcctgacttgcaaattgtgttctaaggctgcta |
46172620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 15767975 - 15767771
Alignment:
| Q |
18 |
aagaaaaacatttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagat |
117 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||||| || ||| ||||| | ||||||||||||||||||||||||||||||| | | ||||||| | |
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|
| T |
15767975 |
aagaaaaacatttgattggagatcgtagtgttagctaaatgttttcaagctacttggttaagttaaagagtagaggtcaatagtggtaattttttaagtt |
15767876 |
T |
|
| Q |
118 |
acatgcctatctgtcatcatcatggagtttttgacctttgaaaacaaaatggtttagaatgtactgatgattctcctacctgactt-taaattgtgttct |
216 |
Q |
| |
|
|| |||||||||| |||||||||||||| |||| |||| || |||| |||||| ||||||| | ||| ||||| | ||| |||| |||||| ||||| |
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|
| T |
15767875 |
acctgcctatctg---tcatcatggagtttctgacttttgtaatcaaattggttttgaatgtattaatgcttctcttgccttacttgcaaattgagttct |
15767779 |
T |
|
| Q |
217 |
aaggctgc |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
15767778 |
aaggctgc |
15767771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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