View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_low_25 (Length: 340)

Name: NF8477_low_25
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_low_25
NF8477_low_25
[»] chr4 (4 HSPs)
chr4 (27-326)||(37176394-37176693)
chr4 (264-326)||(18859089-18859150)
chr4 (27-71)||(2541299-2541343)
chr4 (264-326)||(33401078-33401139)
[»] chr7 (2 HSPs)
chr7 (78-326)||(8397124-8397371)
chr7 (214-326)||(13450496-13450611)
[»] chr5 (5 HSPs)
chr5 (27-115)||(28562894-28562982)
chr5 (27-115)||(28566462-28566550)
chr5 (264-314)||(26547412-26547462)
chr5 (264-314)||(26550971-26551021)
chr5 (264-306)||(40800510-40800552)
[»] chr3 (2 HSPs)
chr3 (27-114)||(2783618-2783705)
chr3 (214-326)||(31857207-31857317)
[»] chr2 (2 HSPs)
chr2 (29-114)||(11059292-11059377)
chr2 (19-113)||(13517803-13517895)
[»] chr1 (1 HSPs)
chr1 (167-210)||(23990958-23991001)
[»] chr6 (1 HSPs)
chr6 (273-326)||(31262046-31262098)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 37176693 - 37176394
Alignment:
Q  27 tgttgccttctattccctcgtgttcccgttccttttcctggcgtgactttgttccaaaacgt-gattccactgtgccgaaacgtgaatgcatatttgtgt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||  ||||||||||||||||||||||||| |||||||||||    
T  37176693 tgttgccttctattccctcgtgttcccgttccttttcctggcgtggctttgttttaaaacggcgattccactgtgccgaaacgtgaatacatatttgtgt 37176594  T
Q  126 gtgttccttcttattatatacactcatgtgacccagtttccttactttctcctcaagctgcctgttacgtttttctttctttttagtcaagccatcttga 225  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37176593 gtgttccttcttcttatatacactcatgcgacctagtttccttactttctcctcaagctgcctgttacgtttttctttctttttagtcaagccatcttga 37176494  T
Q  226 ttttccattggcccatcaattaatgaatctcaaagcatttgctttttgcactacttgttttgctcttgtttgatcatataaccaataatcgatgataata 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37176493 ttttctattggcccatcaattaatgaatctcaaagcatttgctttttgcactacttgttttgctcttgtttgatcatataaccaataatc-atgataata 37176395  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 18859150 - 18859089
Alignment:
Q  264 ttgctttttgcactacttgttttgctcttgtttgatcatataaccaataatcgatgataataa 326  Q
    |||||||| ||||| |||||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  18859150 ttgcttttagcacttcttgtttttctcttgtttgatcacataacaaataatc-atgataataa 18859089  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 2541343 - 2541299
Alignment:
Q  27 tgttgccttctattccctcgtgttcccgttccttttcctggcgtg 71  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||||    
T  2541343 tgttgccttcaattccctcgcgttcctgttccttttcctggcgtg 2541299  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 33401078 - 33401139
Alignment:
Q  264 ttgctttttgcactacttgttttgctcttgtttgatcatataaccaataatcgatgataataa 326  Q
    ||||| || ||||| ||| ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  33401078 ttgctgttggcacttcttattttgctcttgtttgatcacataacaaataatc-atgataataa 33401139  T

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Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 78 - 326
Target Start/End: Complemental strand, 8397371 - 8397124
Alignment:
Q  78 ttccaaaacgtgattccactgtgccgaaacgtgaatgcatatttgtgtgtgttccttcttattatatacactcatgtgacccagtttccttactttctcc 177  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  8397371 ttccaaaacgtgattccaatgtgccgaaacgtgaatgcatatttgtgtgtgtttcttcttcttatatacactcatgtgacctagtttccttactttctcc 8397272  T
Q  178 tcaagctgcctgttacgtttttctttctttttagtcaagccatcttgattttccattggcccatcaattaatgaatctcaaagcatttgctttttgcact 277  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8397271 tcaagctgccttttccgtttttctttctttttagtcaagccatcttgattttctattggcccatcaattaatgaatctcaaagcatttgctttttgcact 8397172  T
Q  278 acttgttttgctcttgtttgatcatataaccaataatcgatgataataa 326  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8397171 acttgttttgctcttgtttgatcatataaccaataatc-atgataataa 8397124  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 13450496 - 13450611
Alignment:
Q  214 aagccatcttgattttccattggcccatca-attaat--gaatctcaaagcatttgctttttgcactacttgtttt-gctcttgtttgatcatataacca 309  Q
    ||||||| ||||||||| |||||||||||| || |||  |||||| ||| |  |||||| ||||||| |||||||| || ||||||||||||||||||||    
T  13450496 aagccattttgattttctattggcccatcacatcaatatgaatcttaaatccattgcttcttgcacttcttgtttttgcccttgtttgatcatataacca 13450595  T
Q  310 ataatcgatgataataa 326  Q
    |||||| ||||||||||    
T  13450596 ataatc-atgataataa 13450611  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 28562894 - 28562982
Alignment:
Q  27 tgttgccttctattccctcgtgttcccgttccttttcctggcgtgactttgttccaaaacgtgattccactgtgccgaaacgtgaatgc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28562894 tgttgccttctattccctcgcgttcccgttccttttcctggcgtggctttgttccaaaacgtgattccactgtgccgaaacgtgaatgc 28562982  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 28566462 - 28566550
Alignment:
Q  27 tgttgccttctattccctcgtgttcccgttccttttcctggcgtgactttgttccaaaacgtgattccactgtgccgaaacgtgaatgc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28566462 tgttgccttctattccctcgcgttcccgttccttttcctggcgtggctttgttccaaaacgtgattccactgtgccgaaacgtgaatgc 28566550  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 26547462 - 26547412
Alignment:
Q  264 ttgctttttgcactacttgttttgctcttgtttgatcatataaccaataat 314  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||    
T  26547462 ttgcttttggcacttcttgttttgctcttgtttgatcacataacaaataat 26547412  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 26551021 - 26550971
Alignment:
Q  264 ttgctttttgcactacttgttttgctcttgtttgatcatataaccaataat 314  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||    
T  26551021 ttgcttttggcacttcttgttttgctcttgtttgatcacataacaaataat 26550971  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 40800510 - 40800552
Alignment:
Q  264 ttgctttttgcactacttgttttgctcttgtttgatcatataa 306  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||    
T  40800510 ttgcttttggcacttcttgttttgctcttgtttgatcacataa 40800552  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 2783705 - 2783618
Alignment:
Q  27 tgttgccttctattccctcgtgttcccgttccttttcctggcgtgactttgttccaaaacgtgattccactgtgccgaaacgtgaatg 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2783705 tgttgccttctattccctcgcgttcccgttccttttcctggcgtggctttgttccaaaacgtgattccactgtgccgaaacgtgaatg 2783618  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 31857317 - 31857207
Alignment:
Q  214 aagccatcttgattttccattggcccatcaattaatgaatctcaaagcatttgctttttgcactacttgtttt-gctcttgtttgatcatataaccaata 312  Q
    ||||||| ||||||||| ||||||||||||||  |||||||| ||| |  |||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  31857317 aagccattttgattttctattggcccatcaat--atgaatcttaaatccattgctttttgcacctcttgtttttgctcttgtttgatcatataatcaata 31857220  T
Q  313 atcgatgataataa 326  Q
    ||| ||||||||||    
T  31857219 atc-atgataataa 31857207  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 11059377 - 11059292
Alignment:
Q  29 ttgccttctattccctcgtgttcccgttccttttcctggcgtgactttgttccaaaacgtgattccactgtgccgaaacgtgaatg 114  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11059377 ttgccttctattccctcgcgttcccgttccttttcctggcgtggctttgttccaaaacgtgattccactgtgccgaaacgtgaatg 11059292  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 13517895 - 13517803
Alignment:
Q  19 gagtttcgtgttgccttctattccctcgtgttcccgttccttttcctggcgtgactttgttccaaaacgtgattccactgtgccgaaacgtgaat 113  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  13517895 gagtttcctgttgccttctattccctcacgttcccgttccttttcctggcgtggctttgttccaaaacgtgattcca--gtgccgaaacgtgaat 13517803  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 23990958 - 23991001
Alignment:
Q  167 ttactttctcctcaagctgcctgttacgtttttctttcttttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23990958 ttactttctcctcaagctgcctgttacgtttttctttcttttta 23991001  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 31262098 - 31262046
Alignment:
Q  273 gcactacttgttttgctcttgtttgatcatataaccaataatcgatgataataa 326  Q
    ||||| |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  31262098 gcacttcttgttttactcttgtttgatcacataaccaataatc-atgataataa 31262046  T

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