View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_26 (Length: 339)
Name: NF8477_low_26
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 36675092 - 36674782
Alignment:
| Q |
19 |
atacgaacattttaaagacttttgcaaacagaaggaagacccaaatgattacttaacctcaagctggaacttcaacaacaaaacagaaggtttcatatgt |
118 |
Q |
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| T |
36675092 |
atacgaacattttaaagacttttgcaaacagaaggaggacccaaatgattacttaacctcaagctggaacttcaacaacaaaacagaaggtttcatatgt |
36674993 |
T |
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| Q |
119 |
agatttaatggtgttgaatgttggcatccagatgagaataaagtactaaatctcaaactatccagcttcgggttgaagggtcagtttccacagggacttg |
218 |
Q |
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| T |
36674992 |
agatttaatggtgttgaatgttggcatccagatgagaataaagtactaaatctcaaactatccagcttcgggttgaagggtcagtttccacagggacttg |
36674893 |
T |
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| Q |
219 |
tgaatcgctcttcgataacaggcttagacctttcaatcaacgagctttcaggacccatctctgaagatatatcaagtatactttcgtatgttaccaacat |
318 |
Q |
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| T |
36674892 |
tgaatcgctcttcgatgacaggcttagacctttcaatcaacgtgctttcaggacccatctctgaagatatatcaagtatactttcgtatgttaccaacat |
36674793 |
T |
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| Q |
319 |
tgatctctctg |
329 |
Q |
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| T |
36674792 |
tgatctctctg |
36674782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 82 - 277
Target Start/End: Complemental strand, 36677777 - 36677582
Alignment:
| Q |
82 |
ctggaacttcaacaacaaaacagaaggtttcatatgtagatttaatggtgttgaatgttggcatccagatgagaataaagtactaaatctcaaactatcc |
181 |
Q |
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| T |
36677777 |
ctgggacttcaacaacagaacagaaggtttcatatgtaaatttactggtgttgaatgctggcatccagatgaaaatagagtactaaatctcaaactatct |
36677678 |
T |
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| Q |
182 |
agcttcgggttgaagggtcagtttccacagggacttgtgaatcgctcttcgataacaggcttagacctttcaatcaacgagctttcaggacccatc |
277 |
Q |
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| T |
36677677 |
aacatggggttgaagggtcagtttccacgaggacttgaaaattgctcttcgttgacgggcttagacctttcggtcaatgacctctcaggatccatc |
36677582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 2605089 - 2605186
Alignment:
| Q |
83 |
tggaacttcaacaacaaaacagaaggtttcatatgtagatttaatggtgttgaatgttggcatccagatgagaataaagtactaaatctcaaactatc |
180 |
Q |
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| T |
2605089 |
tggaatttcaacaataaaactgaagggtttatatgtagatttaatggtgttgaatgctggcatcctgatgagaataaagtcttgaatctcaaattatc |
2605186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 32781955 - 32781885
Alignment:
| Q |
111 |
tcatatgtagatttaatggtgttgaatgttggcatccagat-gagaataaagtactaaatctcaaactatc |
180 |
Q |
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| T |
32781955 |
tcatatgtagatttaatagtgctgaatgttgcaatccagataaaaaataaagcactaaatctcaaactatc |
32781885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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