View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_28 (Length: 331)
Name: NF8477_low_28
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 34203274 - 34203591
Alignment:
| Q |
1 |
tatccatgacaatgataataaaactaatcattttaagaaacaaagatgatacctactccttataccatttgttccgtaagtttgatatcagtgcttcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34203274 |
tatccatgacaatgataataaaactaatcattttgagaaacaaagatgatacctactccttataccatttgttccgtaagtttgatatcagtgcttcaag |
34203373 |
T |
|
| Q |
101 |
gaagtttggaggtttaagatccctcttttgcaacagtgctatagctattgacttggtggttttcgttgactatagctacagtgctataagcttaagcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34203374 |
gaagtttggaggtttaagatccctcttttgcaacagtgctatagctattgacttggtggttttcgttgactatagctacagtgctataagcttaagcaac |
34203473 |
T |
|
| Q |
201 |
ttaagtaagaaaaatatcgctgcgaggattagagtacgggtgcctcataggatacgtaagtgttgtgtcttgtgtaaagcatgctattactattatggtc |
300 |
Q |
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|||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34203474 |
ttaagtaaaagaaatatcgctgcgaggattagagtacaggtgcctcataggatacctaagtgttgtgtcttgtgtaaagcatgctattactattatggtc |
34203573 |
T |
|
| Q |
301 |
gatcaaatattggttatg |
318 |
Q |
| |
|
|||||||||||||||||| |
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| T |
34203574 |
gatcaaatattggttatg |
34203591 |
T |
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