View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_low_31 (Length: 312)

Name: NF8477_low_31
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_low_31
NF8477_low_31
[»] chr4 (1 HSPs)
chr4 (9-300)||(49223883-49224174)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 49223883 - 49224174
Alignment:
Q  9 taacatgactatcttccatagtaggaactactaagaaaccaaagaatattgcaaataactaaaataagcagacacatatataacaaacataaaacttagc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49223883 taacatgactatcttccatagtaggaactactaagaaaccaaagaatattgcaaataactaaaataagcagacacatatataacaaacataaaacttagc 49223982  T
Q  109 agacttagcaaacttaatagttgttatcatgcaaaacttacacaaaggctggtgagtatctaaacttggctgattgtggcagaggtagatattctgtttg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||    
T  49223983 agacttagcaaacttaatagttgttatcatgcaaaacttacacaaaggctggtgagtatctaaacttggctggtcgtggcacaggtagatatactgtttg 49224082  T
Q  209 attaccagtaaccatcacaacaactgatgccactgatgctgcaaacaacagaaaccttaggatcaaatcaaacttagagtgatcaacaccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49224083 attaccagtaaccatcacaacaactgatgccactgatgctgcaaacaacagaaaccttaggatcaaatcaaacttagagtgatcaacaccaa 49224174  T

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