View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_low_32 (Length: 305)

Name: NF8477_low_32
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_low_32
NF8477_low_32
[»] chr2 (4 HSPs)
chr2 (64-289)||(10248922-10249151)
chr2 (1-63)||(4993604-4993666)
chr2 (17-63)||(41985894-41985940)
chr2 (1-63)||(4975696-4975758)
[»] scaffold0189 (2 HSPs)
scaffold0189 (1-68)||(12845-12912)
scaffold0189 (4-63)||(12184-12243)
[»] chr1 (8 HSPs)
chr1 (1-63)||(14925328-14925390)
chr1 (1-63)||(11469081-11469143)
chr1 (1-56)||(11469751-11469806)
chr1 (4-63)||(14924674-14924733)
chr1 (1-63)||(31787478-31787540)
chr1 (2-34)||(7464057-7464089)
chr1 (2-34)||(11427494-11427526)
chr1 (2-34)||(37890520-37890552)
[»] chr3 (5 HSPs)
chr3 (4-64)||(38337466-38337526)
chr3 (4-63)||(38336944-38337003)
chr3 (17-63)||(40819701-40819747)
chr3 (17-63)||(40820511-40820557)
chr3 (23-63)||(42108370-42108410)
[»] chr8 (6 HSPs)
chr8 (1-64)||(12350640-12350703)
chr8 (1-63)||(12349967-12350029)
chr8 (4-63)||(43924490-43924549)
chr8 (4-63)||(43925007-43925066)
chr8 (1-40)||(39257657-39257696)
chr8 (1-40)||(43971301-43971340)
[»] chr4 (6 HSPs)
chr4 (4-58)||(10421570-10421624)
chr4 (1-63)||(6246784-6246846)
chr4 (1-63)||(6247457-6247519)
chr4 (4-64)||(15481034-15481094)
chr4 (4-59)||(15481559-15481614)
chr4 (17-56)||(1014008-1014047)
[»] chr6 (1 HSPs)
chr6 (4-69)||(27763407-27763472)
[»] chr7 (1 HSPs)
chr7 (21-63)||(46756270-46756312)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 64 - 289
Target Start/End: Original strand, 10248922 - 10249151
Alignment:
Q  64 tttaagcactcaaaaagaacacctttgaaaatagtcccacaccgcttgttttaaaataatagagagaaacattcatctacaaaagtgcagcccatcacaa 163  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10248922 tttaagcacgcaaaaagaacacctctgaaaacagtcccacaccgcttgttttaaaataatagagagaaagattcatctacaaaagtgcagcccatcacaa 10249021  T
Q  164 cgaacaatgtaaatcatgtgagacatctcctcattggtgggagtat----ctaagaaggacttttgctggatttttccgacaaaacttgtcctttataga 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10249022 cgaacaatgtaaatcatgtgagacatctcctcattggtgggagtatctgactatgaaggacttttgctggatttttccgacaaaacttgtcctttataga 10249121  T
Q  260 tcaggtatttgcaatcaataaggaggaaat 289  Q
    ||||||||||||||||||||||||||||||    
T  10249122 tcaggtatttgcaatcaataaggaggaaat 10249151  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4993666 - 4993604
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||||| ||| |||||||||||||||||||| | | |||| | |||||||||||    
T  4993666 aatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatactaaacgccacc 4993604  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 41985894 - 41985940
Alignment:
Q  17 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4975758 - 4975696
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||||| ||| ||||||||| |||||||||| | | |||| | |||||||||||    
T  4975758 aatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatactaaacgccacc 4975696  T

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Target: scaffold0189 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12845 - 12912
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacctttaa 68  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  12845 aatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaacgccaccattaa 12912  T

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Target: scaffold0189; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 12243 - 12184
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  12243 ggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaattaaacgccacc 12184  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14925328 - 14925390
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||    
T  14925328 aatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11469143 - 11469081
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||| || |||||||||||||||    
T  11469143 aatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11469751 - 11469806
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaa 56  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||    
T  11469751 aatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaattaaa 11469806  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 14924733 - 14924674
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||||||||||| ||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  14924733 ggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaacaccacc 14924674  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31787540 - 31787478
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||||| ||| ||||||||| |||||||||| | | |||| | |||||||||||    
T  31787540 aatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatactaaacgccacc 31787478  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 7464057 - 7464089
Alignment:
Q  2 atggtcaaaattagttttcccatggtggaaaac 34  Q
    |||||||||||||||||||||||||||| ||||    
T  7464057 atggtcaaaattagttttcccatggtgggaaac 7464089  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 11427494 - 11427526
Alignment:
Q  2 atggtcaaaattagttttcccatggtggaaaac 34  Q
    |||||||||||||||||||||||||| ||||||    
T  11427494 atggtcaaaattagttttcccatggtagaaaac 11427526  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 37890520 - 37890552
Alignment:
Q  2 atggtcaaaattagttttcccatggtggaaaac 34  Q
    |||||||||||||||||||||||||| ||||||    
T  37890520 atggtcaaaattagttttcccatggtagaaaac 37890552  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 38337466 - 38337526
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 64  Q
    |||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  38337466 ggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaacgccacct 38337526  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 38337003 - 38336944
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  38337003 ggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaatgccacc 38336944  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 40819747 - 40819701
Alignment:
Q  17 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  40819747 tttcccatgatggaaaataacttcacttccccatattaaatgccacc 40819701  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 40820511 - 40820557
Alignment:
Q  17 tttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  40820511 tttcccatggtgggaaaaaacttcactgccccatattaaacgccacc 40820557  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  23 atggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12350640 - 12350703
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 64  Q
    ||||||||||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  12350640 aatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaacgccacct 12350703  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12350029 - 12349967
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||||| |||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||    
T  12350029 aatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 43924549 - 43924490
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||||||||||| ||||||||||||| |||||||||| ||| ||||||||||| ||||||    
T  43924549 ggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 43925007 - 43925066
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||||||||||  |||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  43925007 ggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaattaaacgccacc 43925066  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39257696 - 39257657
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttc 40  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  39257696 aatggtcaaaattagctttcccatggtgggaaacaacttc 39257657  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43971340 - 43971301
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttc 40  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  43971340 aatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 10421570 - 10421624
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacg 58  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  10421570 ggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaattaaacg 10421624  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6246846 - 6246784
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    ||||||||||||||  ||||||||||||| |||||| ||| ||| ||||||||||||||||||    
T  6246846 aatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6247457 - 6247519
Alignment:
Q  1 aatggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||| |||||||||||||||||||| ||  |||||||||| ||| ||||||||||||||||||    
T  6247457 aatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaattaaacgccacc 6247519  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 15481094 - 15481034
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacct 64  Q
    |||||||||||| |||||||||  || |||||||||| ||||||||||||||||| |||||    
T  15481094 ggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaacgtcacct 15481034  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 15481559 - 15481614
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgc 59  Q
    ||||||||||||||||||||| |||| |||||||||| ||| | ||||||||||||    
T  15481559 ggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaattaaacgc 15481614  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 1014008 - 1014047
Alignment:
Q  17 tttcccatggtggaaaacaacttcacttccccaaattaaa 56  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  1014008 tttcccatggtgggaaacaacttcacttacccaaattaaa 1014047  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 27763472 - 27763407
Alignment:
Q  4 ggtcaaaattagttttcccatggtggaaaacaacttcacttccccaaattaaacgccacctttaag 69  Q
    ||||||||||||||||||| |||||| |||||||||| ||||||||||||||| | ||||| ||||    
T  27763472 ggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaattaaatgtcacctgtaag 27763407  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 46756312 - 46756270
Alignment:
Q  21 ccatggtggaaaacaacttcacttccccaaattaaacgccacc 63  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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