View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_33 (Length: 303)
Name: NF8477_low_33
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 54023397 - 54023678
Alignment:
| Q |
14 |
atcagtttcaaataaatcaattaaatgatctaactataagaaaacatact------atatgattaatcattcaaatacctgcagaagaagtattgttccg |
107 |
Q |
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| T |
54023397 |
atcagtttcaaataaatcaattaaatgatctaactataagaaaacatactactactatatgattaatcatacaaatacctgcagaataagtattgttccg |
54023496 |
T |
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| Q |
108 |
ttgtttataggtagaagtagtctttttctgagtcttcttgccatcacctgaatttgccaaacagtttcccatggttttgacaataatgatcgagtgaaga |
207 |
Q |
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| T |
54023497 |
ttgtttataggtagaagtagtctttttctgagtcttcttgccatcacctgaatttgccaaacagtttcccatggttttgacaataatgatcgagtgaaga |
54023596 |
T |
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| Q |
208 |
tgaaattaacgttgcaaactatgaatcaaactaatatatataaatggaattggaaattgacaaagtttaataatgctaccac |
289 |
Q |
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| T |
54023597 |
tgaaattaacgttgcaaactatgaatcgaactaatatatataaatggaattggaaattgacaaagtttaataatgctaccac |
54023678 |
T |
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