View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_38 (Length: 294)
Name: NF8477_low_38
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 6931559 - 6931802
Alignment:
| Q |
14 |
ataacaacatttaaaggtatacttatatgcatatttatgcctacagtttttcaaatttttgttaccatcattaaagtcactgattattttttcttctagt |
113 |
Q |
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| T |
6931559 |
ataacaacatttaaaggtatacttatatgcatatttatgcctacagtttttcaaatttttgttaccatcattaaagtcactgattattttttcttccagt |
6931658 |
T |
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| Q |
114 |
atgaacaaacattaattagtatagatggctacccaactaaatatttcacaagctttaacttctcatttaatccatcacctgaaaaaataaacatcacttt |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6931659 |
atgaacaaacattaattaatatagatggctacccaactaaatatttcacaagctttaacttctcatttaatccatcacctgaaaaaataaacatcacttt |
6931758 |
T |
|
| Q |
214 |
gattatatttttcttatagtatctttataaagatcatatttttga |
258 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
6931759 |
gattatatttttcttatagtatc-ttataaagatcaaatttttga |
6931802 |
T |
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