View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_4 (Length: 556)
Name: NF8477_low_4
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 5497863 - 5498329
Alignment:
| Q |
16 |
tgttaaagaggtcatggagacatgcatatttcaattttgtatatgacatgagagataaacttctggttttgatcgcagttaacttagcacgtctaaagcc |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
5497863 |
tgttaaagaggtcttggagacatgcatatttcaattctgtatatgacatgaaagataaacttctggttttgattgcggttaacttagcacgtataaagga |
5497962 |
T |
|
| Q |
116 |
catgtttggattggaaaggaactgattgtctctattg----aactttgcacttgatcatcgctcttatactttgcatgtgtggattgtttaaatttgtgt |
211 |
Q |
| |
|
|| | | | | | | | ||||| ||| ||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5497963 |
actgatgccgtagtatatctatttattgtatctgttggttgaactttgcactcaatcatcggtattatactttgcatgtgtggattgtttaaatttttgt |
5498062 |
T |
|
| Q |
212 |
gtgtgatatatgtagactggtgactcttgcatgtatggatgtttacaagttatatagtaggctattcaagtttaactttttggccaataaatttacaata |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||| |||||||| ||||||||||||||| || ||||||||| ||| |
|
|
| T |
5498063 |
gtgtgatatatgtggactggtgactcttgcatgtgtgggtgtttagaagttatatagcaggctattttagtttaactttttggtcattaaatttactata |
5498162 |
T |
|
| Q |
312 |
aggatccatttgtaaagtacttatatttctttctagggtaaaatattttgtacacccacattttctctatta-ccaggtacaatcttttttctgctagaa |
410 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
5498163 |
aggatccatttgaaaagttcttagatttctttctagggtaaaattttttgtacacccccattttctatattaggcaggtacaatcttttttcagctagaa |
5498262 |
T |
|
| Q |
411 |
tacccctatcagaaagtatacttttggatggtaacgtttgacaagcacgttatcattgaacatgcaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||| |
|
|
| T |
5498263 |
tacccctatcagaaagtatacttttggatggtaccgcttgacaaacacattatcattgaacatgcaa |
5498329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 5502903 - 5503032
Alignment:
| Q |
12 |
ttggtgttaaagaggtcatggagacatgcatatttcaattttgtatatgacatgagagataaacttctggttttgatcgcagttaacttagcacgtctaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5502903 |
ttggtgttaaagaggtcttggagacatgcatatttcaattttgtatatgacctgagagataaacttctgattttgatggcagttaacttagcacgtctaa |
5503002 |
T |
|
| Q |
112 |
agcccatgtttggattggaaaggaactgat |
141 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
5503003 |
agcgtgtgtttggattggaaaggaactgat |
5503032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 5492096 - 5492215
Alignment:
| Q |
19 |
taaagaggtcatggagacatgcatatttcaattttgtatatgacatgagagataaacttctggttttgatcgcagttaacttagcacgtctaaagcccat |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| | |||||||||| || |
|
|
| T |
5492096 |
taaagaggtcttggagacatgcatatttcaattttgtatatgacacaagagataaacttctggttttgatggcaattaatttaccgcgtctaaagcgcaa |
5492195 |
T |
|
| Q |
119 |
gtttggattggaaaggaact |
138 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
5492196 |
gtttggattggaaagcaact |
5492215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 445
Target Start/End: Original strand, 5487311 - 5487411
Alignment:
| Q |
345 |
tagggtaaaatattttgtacacccacattttctctattacc-aggtacaatcttttttctgctagaatacccctatcagaaagtatacttttggatggta |
443 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5487311 |
tagggtaaaat-ttttgtacacccccattttctctattacccaggtacaatattttttctgctagaatacccctatcagaaagtatacttttggacggta |
5487409 |
T |
|
| Q |
444 |
ac |
445 |
Q |
| |
|
|| |
|
|
| T |
5487410 |
ac |
5487411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 5478986 - 5479110
Alignment:
| Q |
16 |
tgttaaagaggtcatggagacatgcatatttcaattttgtatatgacatgagagataaacttctggttttgatcgcagttaacttagcacgtctaaagcc |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||| | ||||| || || ||| |||||| |
|
|
| T |
5478986 |
tgttaaagaggtcttggagacatgcatatttcaattttgtatatgaaaccagagataaacttatggtcttgatggtggttaatttggcgcgtgtaaagcg |
5479085 |
T |
|
| Q |
116 |
catgtttggattggaaaggaactga |
140 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
5479086 |
taggtttggattggaaaggaactga |
5479110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 5503072 - 5503163
Alignment:
| Q |
149 |
attgaactttgcacttgatcatcgctcttatactttgcatgtgtggattgtttaaatttgtgtgtgtgatatatgtagactggtgactcttg |
240 |
Q |
| |
|
||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5503072 |
attgaactttgcactcggtcattactgttatactttgcatgtgtggattgtttaaatttgtgtgtgtgatatatgtgcactggtgattcttg |
5503163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 5487086 - 5487153
Alignment:
| Q |
12 |
ttggtgttaaagaggtcatggagacatgcatatttcaattttgtatatgacatgagagataaacttct |
79 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5487086 |
ttggtgttaaagaggtcttggagacatgcatatttcaattttttgtatgacatgagagataaacttct |
5487153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 5469330 - 5469455
Alignment:
| Q |
16 |
tgttaaagaggtcatggagacatgcatatttcaattttgtatatgacatgagagataaacttctggttttgatcgcagttaacttagcacgtctaaagcc |
115 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| | ||||||| ||||||||| |||||||||| || || ||||| ||| | |||||||| |
|
|
| T |
5469330 |
tgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgacacaagagataaagttctggttttcatggcggttaatttaatgcatctaaagcg |
5469429 |
T |
|
| Q |
116 |
catgtttggattggaaaggaactgat |
141 |
Q |
| |
|
|| |||||||| |||||||||||||| |
|
|
| T |
5469430 |
caggtttggatcggaaaggaactgat |
5469455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 5487199 - 5487237
Alignment:
| Q |
251 |
tgtttacaagttatatagtaggctattcaagtttaactt |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5487199 |
tgtttacaagttatatagtaggttattcgagtttaactt |
5487237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 5492255 - 5492312
Alignment:
| Q |
150 |
ttgaactttgcacttgatcatcgctcttatactttgcatgtgtggattgtttaaattt |
207 |
Q |
| |
|
|||||||||||| | ||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
5492255 |
ttgaactttgcagtcgatcatcattaatatattttgcatgtgtggattgtttaaattt |
5492312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University