View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_41 (Length: 283)
Name: NF8477_low_41
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 46 - 266
Target Start/End: Original strand, 37558023 - 37558243
Alignment:
| Q |
46 |
tggtgttaacaaaaagggccctccaaaactaaggatgtatggagtcacatacctacgtttgacagaagaattattccagaaacaaaattttgatatattc |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37558023 |
tggtgttaacaaaaagggccctccaaaactaaggatgtatggagtcacatacctacgtttgacagaagaattattccagaaacaaaattttgatatattc |
37558122 |
T |
|
| Q |
146 |
aaaatctttgtgaaaaagatgcatgctaatcaggtattgtaaattaaaagacgttgatattttcatatttgtcggtgtttgaagcgaactaatcaaaggt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37558123 |
aaaatctttgtgaaaaagatgcatgctaatcaggtattgtaaattaaaagacgttgatattttcatatttgtcggtgtttgaagcgaactaatcaaaggt |
37558222 |
T |
|
| Q |
246 |
gaaattctgcaggatctttgt |
266 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37558223 |
gaaattctgcaggatctttgt |
37558243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19149992 - 19150035
Alignment:
| Q |
1 |
ctgctaggtggatatcacaaccaagggcttcaaataagtcgagt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19149992 |
ctgctaggtggatatcacaaccaagggcttcaaataagtcgagt |
19150035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University