View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_low_42 (Length: 267)

Name: NF8477_low_42
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_low_42
NF8477_low_42
[»] chr1 (1 HSPs)
chr1 (13-250)||(36375675-36375912)
[»] chr3 (4 HSPs)
chr3 (18-222)||(32249557-32249761)
chr3 (52-246)||(32190113-32190307)
chr3 (16-223)||(32192582-32192788)
chr3 (97-224)||(32184879-32185005)
[»] chr7 (2 HSPs)
chr7 (17-246)||(8844096-8844325)
chr7 (17-222)||(8823567-8823772)
[»] chr5 (1 HSPs)
chr5 (191-229)||(35959222-35959260)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 36375912 - 36375675
Alignment:
Q  13 attctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcag 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36375912 attctgctgttttgatcaaccatggatgtattgacccgagtgttatcaaaagctcaacctcaagagagtaaccggtactgcccaccattttcttttgcag 36375813  T
Q  113 tttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36375812 tttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaaca 36375713  T
Q  213 tcgataaaaccatttgtgatttttcgaagcacatctat 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36375712 tcgataaaaccatttgtgatttttcgaagcacatctat 36375675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 32249557 - 32249761
Alignment:
Q  18 gctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttct 117  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||   |  |||||||||| || |||||||    
T  32249557 gctgttttgatcaaccatggatgtattgatccgagtgttatcaaaagctcaacctcaagagggtaactggtactctcggccattttcttctgaagtttct 32249656  T
Q  118 gcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgat 217  Q
    | |||||||| || ||||| ||||| | ||||| |||||||||||| ||||| ||||| |||||||| ||||||||| |||||| ||| || ||||| ||    
T  32249657 gtacaatctcatgctgttcgtcggacgtattcatgagcaatgtatatatttgtaaaccaggaagagtctcagaagaatttccactgtcgtacacatcaat 32249756  T
Q  218 aaaac 222  Q
    |||||    
T  32249757 aaaac 32249761  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 32190113 - 32190307
Alignment:
Q  52 gtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcac 151  Q
    |||||||||||||| ||||||||||||  ||||| || ||     |||||||||||||||||||  | | ||  |||||||||||||| |||| |||||     
T  32190113 gtgttatcaaaagcacaacctcaagaggataaccagtgcacttagccattttcttttgcagtttacgtaaaacttcgtgttgttcatcagatgtattcat 32190212  T
Q  152 gagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacat 246  Q
    ||||| ||| |||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||| |||| | | ||||||||||| |||||||    
T  32190213 gagcagtgtttagatttgtaaacctggaagagtatcagaagaatttccactgtcataaacatcgatgaaacgactagtgatttttcgcagcacat 32190307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 32192788 - 32192582
Alignment:
Q  16 ctgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagttt 115  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||  |||||||||||||  ||||  |||||     |||||||||| |||| |||    
T  32192788 ctgctgttttgatcaactatggatgtatcgacccgagtgttatcaaaatttcaacctcaagagtataacttgtacacttagccattttcttctgcatttt 32192689  T
Q  116 ctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcg 215  Q
     || | |||| ||||||||||| | |||| ||||| ||||| | | |||||||| ||| | |||||||||||| ||||| |||||| |||||||| |||     
T  32192688 atgtaaaatcacgtgttgttcagcagatgtattcatgagcagtatttagatttgtaaa-ctggaagagtatcataagaatttccactgtcataaagatca 32192590  T
Q  216 ataaaacc 223  Q
    || |||||    
T  32192589 atgaaacc 32192582  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 32185005 - 32184879
Alignment:
Q  97 ccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaact 196  Q
    |||||||||| ||||||||||| | |||||  ||||||||||||||  |||| | ||||| | |||||||||  || ||   ||||||||||||| || |    
T  32185005 ccattttcttctgcagtttctgaa-aatcttatgttgttcatcggacacatttatgagcactttatagatttctaatcctaaaagagtatcagaataatt 32184907  T
Q  197 tccaccgtcataaacatcgataaaacca 224  Q
    ||||   |||||||||||||| ||||||    
T  32184906 tccattttcataaacatcgatgaaacca 32184879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 8844096 - 8844325
Alignment:
Q  17 tgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttc 116  Q
    |||||||||||||||||||||||||||  | || ||||||||||||||||| |||||||||| |||||| |||||  |  |||||||||| |||||||||    
T  8844096 tgctgttttgatcaaccatggatgtatcgatccaagtgttatcaaaagctctacctcaagagggtaaccagtacactcagccattttcttctgcagtttc 8844195  T
Q  117 tgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcga 216  Q
    || | ||||||  | ||||||||| ||| ||||| ||||| |||||| ||||| ||||| ||||| |||||||| ||| ||||||  |||||||| ||||    
T  8844196 tgtaaaatctcaagctgttcatcgtatgtattcatgagcagtgtatatatttgtaaaccaggaagtgtatcagaggaatttccactttcataaacgtcga 8844295  T
Q  217 taaaaccatttgtgatttttcgaagcacat 246  Q
    | ||||   ||||||| ||||| |||||||    
T  8844296 tgaaactgcttgtgatctttcgcagcacat 8844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 8823772 - 8823567
Alignment:
Q  17 tgctgttttgatcaaccatggatgtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttc 116  Q
    |||| ||||||||||||||||||||||  | |  ||||||||||||| ||| |||||||||||||||| ||||||  |  |||||||||||||||||||     
T  8823772 tgctattttgatcaaccatggatgtatggatctaagtgttatcaaaatctctacctcaagagagtaactggtacactcagccattttcttttgcagttta 8823673  T
Q  117 tgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcga 216  Q
    |  | || ||| |||||||||||  | | ||||  || || |||||| ||||| ||||| ||| | |||||||||||| ||||||  |||||||| ||||    
T  8823672 tatataacctcatgttgttcatcatacgtattcctgaccagtgtataaatttgtaaaccaggaggtgtatcagaagaatttccactttcataaacgtcga 8823573  T
Q  217 taaaac 222  Q
    | ||||    
T  8823572 tgaaac 8823567  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 35959222 - 35959260
Alignment:
Q  191 agaacttccaccgtcataaacatcgataaaaccatttgt 229  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  35959222 agaacttccagcttcataaacatcgataaaaccatttgt 35959260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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