View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_43 (Length: 266)
Name: NF8477_low_43
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_43 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 14925045 - 14925274
Alignment:
| Q |
13 |
ataatactgcaaacgagacaatagaggtgaatcagatgatggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14925045 |
ataatactgcaaacgagacaatagaggtgaatcaggtgatggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
14925144 |
T |
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| Q |
113 |
ctagcatgtgccatcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccagattcgggaaggagagaaagaaaagagagtt |
212 |
Q |
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| T |
14925145 |
ccagcatgtgccatcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccaaattcgggaaggagagaaagaaaagagagtt |
14925244 |
T |
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| Q |
213 |
ggggcagctgcaagtggtgggccaatatgg |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14925245 |
ggggcagctgcaagtggtgggccaatatgg |
14925274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 11469253 - 11469201
Alignment:
| Q |
189 |
gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatg |
241 |
Q |
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| T |
11469253 |
gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatg |
11469201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 12562 - 12791
Alignment:
| Q |
13 |
ataatactgcaaacgagacaatagaggtgaatcagatgatggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
112 |
Q |
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| T |
12562 |
ataatactgcaagcgagacaatagaggtgaatcaggtgatggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
12661 |
T |
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| Q |
113 |
ctagcatgtgccatcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccagattcgggaaggagagaaagaaaagagagtt |
212 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12662 |
ccagcatgtgccatcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcaccagattcgggaaggagagaaagaaaagagagtt |
12761 |
T |
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| Q |
213 |
ggggcagctgcaagtggtgggccaatatgg |
242 |
Q |
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| T |
12762 |
ggggcagctgcaagtggtgggccaatatgg |
12791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 10421261 - 10421033
Alignment:
| Q |
13 |
ataatactgcaaacgagacaatagaggtgaatcagatgatggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10421261 |
ataatactgcaaacgagacaatagaggtgaatcag-tgatgatgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
10421163 |
T |
|
| Q |
113 |
ctagcatgtgccatcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcgccagattcgggaaggagagaaagaaaagagagtt |
212 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
10421162 |
ccagcatgtgccatcactctgttcctcttatattcatcctggaattgttgaagcatgcaagcgtcaccaaattcgggaaggagagaaagaaaagagagtt |
10421063 |
T |
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| Q |
213 |
ggggcagctgcaagtggtgggccaatatgg |
242 |
Q |
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| T |
10421062 |
ggggcagctgcaagtggtgggtcaatatgg |
10421033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 6246956 - 6246903
Alignment:
| Q |
189 |
gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatgg |
242 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6246956 |
gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatgg |
6246903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 45500899 - 45501022
Alignment:
| Q |
13 |
ataatactgcaaacgagacaatagaggtgaatcagatgatggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagtt |
112 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45500899 |
ataatactgcaaacgagataatagaggtgaatcaggtgatggtgtttttgtgtttgttgtggagacatagatgtgggatcaaattctcaaaaatcaagtt |
45500998 |
T |
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| Q |
113 |
ctagcatgtgccatcactctgttc |
136 |
Q |
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| |||||||||||||||||||||| |
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| T |
45500999 |
ccagcatgtgccatcactctgttc |
45501022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 12350527 - 12350580
Alignment:
| Q |
189 |
gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatgg |
242 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
12350527 |
gaaggagagaaagaaaagagagttgggacagctacaagtggtgggccaatatgg |
12350580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 4555265 - 4555321
Alignment:
| Q |
186 |
cgggaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatgg |
242 |
Q |
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||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
4555265 |
cgggaaggaaagaaataaaagagagttgggacagctgcaagcggtgggccaatatgg |
4555321 |
T |
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