View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_49 (Length: 240)
Name: NF8477_low_49
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_49 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 2795377 - 2795154
Alignment:
| Q |
17 |
agaagcttcacaagctgagtataaattcgatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatct |
116 |
Q |
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| T |
2795377 |
agaagcttcacaagctgagtataaattcgatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatct |
2795278 |
T |
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| Q |
117 |
gtttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcacgcagacgattagataaattgccaacaatctcagttacaagagc |
216 |
Q |
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| T |
2795277 |
gtttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcctgcagacgattagataaattgccaacaatctcagttacaagagc |
2795178 |
T |
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| Q |
217 |
tttcataggcgcaacataaacaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
2795177 |
tttcataggcgcaacataaacaat |
2795154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 29262888 - 29262667
Alignment:
| Q |
19 |
aagcttcacaagctgagtataaattcgatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgt |
118 |
Q |
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| T |
29262888 |
aagcttcacaagctgcgtataagttcgatctcccgactttcgggtgataatatcccacttctcaggagttgtcacaataatttgagtctcttcgatctgc |
29262789 |
T |
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| Q |
119 |
ttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcacgcagacgattagataaattgccaacaatctcagttacaagagctt |
218 |
Q |
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| T |
29262788 |
tgcctggttagtgactggtctccactaagctccctaaccgtaacattatagtcctgcaaccgattagacaaattcccaacaacctccgccacaagagctt |
29262689 |
T |
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| Q |
219 |
tcataggcgcaacataaacaat |
240 |
Q |
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|||| || |||||||| ||||| |
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| T |
29262688 |
tcattggtgcaacatatacaat |
29262667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 29189353 - 29189413
Alignment:
| Q |
59 |
cgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtt |
119 |
Q |
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| T |
29189353 |
cgtgtaataatgtctcatttctcaggagttgtcaccataatctgactctcttctatctgtt |
29189413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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