View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_50 (Length: 239)
Name: NF8477_low_50
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_50 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 29373279 - 29373055
Alignment:
| Q |
17 |
ctatggaccctaaaggcaatgccagccgcagcacacagactcaccatagcagaaaaatcaacaat--ccctgccactctgctggaccagcagccaacaaa |
114 |
Q |
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| T |
29373279 |
ctatggaccctaaaggcaatgccagccgcagcacacagacacaccatagcagaaaaatcaacagtggccctgccactctgctggaccagcagccaacaaa |
29373180 |
T |
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| Q |
115 |
cccaatcggacaccaaaacagtcccaaacagagacgaaaactccactacctccccagtcactccctcgggttccaacaccactaataaaagaggccataa |
214 |
Q |
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| T |
29373179 |
cccaatcggacaccaaaacagtcccaaacagagacgaaaactccactacctcctcagtcactctctcaggttccaacaccactcataaaagaggccataa |
29373080 |
T |
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| Q |
215 |
acaatcttcaatctactcaaagtcc |
239 |
Q |
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| T |
29373079 |
acaatcttcaatctactcaaagtcc |
29373055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 11682018 - 11682133
Alignment:
| Q |
18 |
tatggaccctaaaggcaatgccagccgcagcacacagactcaccatagcagaaaaatcaacaatc-cctgccact-ctgctggaccagcagccaacaaac |
115 |
Q |
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| T |
11682018 |
tatggaccctaaaggcaatcccagccgaggcaca--gacaaaccatagcagaaaaaccaacattggcctgctacaactgctgaaccagcagccaacaata |
11682115 |
T |
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| Q |
116 |
ccaatcggacaccaaaac |
133 |
Q |
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| T |
11682116 |
ccaatcggacaccaaaac |
11682133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 10643011 - 10642960
Alignment:
| Q |
97 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
148 |
Q |
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| T |
10643011 |
ggaccagcagccaacaacaccaatcagacaccaaaacagacccaaacagaga |
10642960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 32712827 - 32712878
Alignment:
| Q |
97 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
148 |
Q |
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| T |
32712827 |
ggaccagcagccaacaacaccaatcgaacaccaaaacagacccaaacagaga |
32712878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 3585 - 3534
Alignment:
| Q |
97 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
148 |
Q |
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| T |
3585 |
ggaccagcagccaacaacaccaatcggacaccaaaacagacccaaacagaga |
3534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 23923638 - 23923689
Alignment:
| Q |
97 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
148 |
Q |
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| T |
23923638 |
ggaccagcagccaacaacgccaatcggacaccaaaacagacccaaacagaga |
23923689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 23923520 - 23923561
Alignment:
| Q |
92 |
ctgctggaccagcagccaacaaacccaatcggacaccaaaac |
133 |
Q |
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| T |
23923520 |
ctgctggaccagcagccaacaacaccaattggacaccaaaac |
23923561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 17257131 - 17257070
Alignment:
| Q |
173 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaa |
234 |
Q |
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| T |
17257131 |
cactcccttgggttccaacaccactcgtaaaagaggcaagaagcaatcttcaacctactcaa |
17257070 |
T |
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