View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_53 (Length: 229)
Name: NF8477_low_53
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_53 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9772798 - 9773026
Alignment:
| Q |
1 |
ttacataagtgtgttatctaactccattaaagttcatagagacaaaaatatagacaaatagaaactagttggcacacataacaaactcaatttaccccta |
100 |
Q |
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| T |
9772798 |
ttacatacgtgtgttatctaactccattaaagttcatagagacaaaaatatagacaaatagaaactagttggcacacataacaaactcaatttaccccta |
9772897 |
T |
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| Q |
101 |
tgattagattttgaatagaatggccaaccacattgttgtatctatctaattgtttttctccatacagacatctatcttagacccttgcatataccaaatt |
200 |
Q |
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| T |
9772898 |
tgattagattttgaatagaatggccaaccacattgttgtatctatctaattgtttttctccatacagacatctatcttagacccttgcatataccaactt |
9772997 |
T |
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| Q |
201 |
ccaactcattgtgccttttcactttatca |
229 |
Q |
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| T |
9772998 |
ccaactcattgtgccttttcactttatca |
9773026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 9569849 - 9569924
Alignment:
| Q |
136 |
ttgtatctatctaattgtttttctccatacagacatctatcttagacccttgcatataccaaattccaactcattg |
211 |
Q |
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| T |
9569849 |
ttgtatctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattg |
9569924 |
T |
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