View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_55 (Length: 219)
Name: NF8477_low_55
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 49461461 - 49461262
Alignment:
| Q |
1 |
ttattttgttttatcaaacgggtcatcatagattgagtgatcatcggttaaaaatgtatctgcatctttatttgaaaatccggagctcatgcatgattat |
100 |
Q |
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| T |
49461461 |
ttattttgttttatcaaacgggtcatcatagattgagtgatcatcggttaaaaatgtatctgcatttttatttgaaaatccagagctcatgcatgattat |
49461362 |
T |
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| Q |
101 |
agattctgggcaataatttattctcttgttggacttgggaatgtaagtttttgactataaaacttttaagaaagtcgctagaaatatcaacaacttacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49461361 |
agattctgggcaataatttattctcttgttggacttgggaatgtaagtttttgactataaaacttttaagaaagtcgctagaaatatcaacaacttacca |
49461262 |
T |
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