View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_6 (Length: 552)
Name: NF8477_low_6
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 36941967 - 36942483
Alignment:
| Q |
17 |
agagaagacaacgatgttatagtatcgcatccttgaagaataaaaaatagagtttagaggtatctatgagtcctttgccatcaatgtccagaatatcatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36941967 |
agagaagacaacgatgttatagtatcgcatccttgaagaataaaaaatagagtttagaggtatctatgagtcctttgccatcaatgtc-agaatatcatg |
36942065 |
T |
|
| Q |
117 |
ccaaacatgtggataaacatcacctgcatagtgcttaccttaatgtgagtgaccagttcatgatcacttgattagttttgcacaactcataagtttcttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942066 |
ccaaacatgtggataaacatcacctgcatagtgcttaccttaatgtgagtgaccagttcatgatcacttgattagttttgcacaactcataagtttcttt |
36942165 |
T |
|
| Q |
217 |
tataaaggtttatgcattgggaaatagaaagaaattgacatcaagaaaaaggaggagtttgtatttgttgtatagatgatgnnnnnnnttgcaagttaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36942166 |
tataaaggtttatgcattgggaaatagaaagaaattgacatcaagaaaaaggaggagtttgtatttgttgtatagatgatgaaaaaaattgcaagttaaa |
36942265 |
T |
|
| Q |
317 |
ttggtgtgctaaaaataattaacattctatttaccaataattgttttaatatctagtaactatcttgtcaaaaataaataggcaaacataaataagttat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942266 |
ttggtgtgctaaaaataattaacattctatttaccaataattgttttaatatctagtaactatcttgtcaaaaataaataggcaaacataaataagttat |
36942365 |
T |
|
| Q |
417 |
aagagcattgcaattataattggcagctagcttaccttcaagattttcaaagtgctgcttagaattcttgggactgatatgactatcccaccaccaagaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942366 |
aagagcattgcaattataattggcagctagcttaccttcaagattttcaaagtgctgcttagaattcttgggactgatatgactatcccaccaccaagaa |
36942465 |
T |
|
| Q |
517 |
tgtgacttccttaattcc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36942466 |
tgtgacttccttaattcc |
36942483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 36951461 - 36951498
Alignment:
| Q |
215 |
tttataaaggtttatgcattgggaaatagaaagaaatt |
252 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36951461 |
tttataaaggtttatgcattggggaatagaaagaaatt |
36951498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 445 - 534
Target Start/End: Original strand, 32105960 - 32106049
Alignment:
| Q |
445 |
agcttaccttcaagattttcaaagtgctgcttagaattcttgggactgatatgactatcccaccaccaagaatgtgacttccttaattcc |
534 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32105960 |
agctaaccttcaagattttcaaagagccatttagaattcttgggactgatatgactatcccaccaccaagaatgtgatttccttgattcc |
32106049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University