View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_8 (Length: 483)
Name: NF8477_low_8
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 44650621 - 44650167
Alignment:
| Q |
18 |
gtccaaataattgtgaatctccaccaatgactccatacccaccacaaaattcatattttccaccaggaacaccatttccatattatgtacctccagatta |
117 |
Q |
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| T |
44650621 |
gtccaaataattgtgaatctccaccaatgactccatacccaccacaaaattcatattttccaccaggaacaccatttccatattatgtacctccagatta |
44650522 |
T |
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| Q |
118 |
ttataacaagaatagcggtgaaacgttggttccatttcaaccaatattcttctcgaacccgaattctcactttgtgtactccataattcaatgtttgatt |
217 |
Q |
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| T |
44650521 |
ttataacaagaatagcggtgaaacgttggttccatttcaagcaatattcttctcgaacccgaattctcactttgtgtactccataattcaatgtttgatt |
44650422 |
T |
|
| Q |
218 |
aatttgctctttctctgccttccatattgtataatttataggtgaattgttgttatggtaattcacgtccttaatttgtgcttccatattgtatactttt |
317 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44650421 |
aatttgctctttctctgccttccata-tgtataatttataggtaaattattgttatggtagttcacgtccttaatttgtgcttccatattgtatactttt |
44650323 |
T |
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| Q |
318 |
aagttaactttggtaattcattcatggtccttagtttgtgctttcgagaccgagtagctctatactagaagactc--atatatattcgcatgacaaatga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44650322 |
aagttaactttggtaattcattcatggtccttagtttgtgctttcgagaccgagtagctctatactagaagactcagatatatattcgcatgacaaatga |
44650223 |
T |
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| Q |
416 |
tagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaacaatcg |
471 |
Q |
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| T |
44650222 |
tagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaacaatcg |
44650167 |
T |
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