View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_low_9 (Length: 462)
Name: NF8477_low_9
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 1718989 - 1719421
Alignment:
| Q |
18 |
gattgttaatactagtatgcctctactgctgtgtgcagaaaacatccacagatattaaattcttttatgttttcacaatgctatatcttatgaaactgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1718989 |
gattgttaatactagtatgcctctactgctgtgtgcagaaaacatccacagatattaaattcttttatgttttcacaatgctatatcttatgaaactgta |
1719088 |
T |
|
| Q |
118 |
aagtcttactcagcttgcacaataggacttttgaagatcatgttagatgttttaaactttctctaaaatctttgatattattaggtaaggtgaaaatgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719089 |
aagtcttactcagcttgcacaataggacttttgaagatcatgttagatgttttaaagtttctctaaaatctttgatattattaggtaaggtgaaaatgca |
1719188 |
T |
|
| Q |
218 |
ttcatttatagtgttatgtgtgaaaggatagctacttacttgctcaattctacggtgaaaaatacgtttcaagatcccattgaggtgtttgcttcggtga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1719189 |
ttcatttatagtgttatgtgtgaaaggatagctacttacttgctcaattctacggtgaaaaatacgtttcaagatcccattgaagtgtttgcttcggtga |
1719288 |
T |
|
| Q |
318 |
accattccaatttcctcttgcaatttttctagcaaaccgacatatgtaattccagaatgttctcggattatttttgttaaaagataggtcataacaccgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719289 |
accattccaatttcctcttgcaatttttctagcaaaccgacatatgtaattccagaatgttctcggattatttttgttaaaagataggtcataacaccgt |
1719388 |
T |
|
| Q |
418 |
tcatctcttttcctccaaaagcctgcacaggtt |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1719389 |
tcatctcttttcctccaaaagcctgcacaggtt |
1719421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University