View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_high_11 (Length: 463)
Name: NF8478_high_11
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 46938691 - 46938251
Alignment:
| Q |
19 |
gcgacaaggtaagaccattcaaatagtgcaatgttgttgattgaataaacttataacaatgacttgcttgcagtacaagtatgacccaccaa-------- |
110 |
Q |
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| T |
46938691 |
gcgacaaggtaagaccattcaaatagtgcaatgttgttgattgaataaacttataacaatgacttgcttgcagtacaagtatgacccaccaaacatacaa |
46938592 |
T |
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| Q |
111 |
----gcatcaattgttagatagaaaaataatggatagctaactgtacagcagatctatgtttcaaaaacaagcaaactatgttagtcttaaaacacatat |
206 |
Q |
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| T |
46938591 |
acaagcatcaattgttagatagaaaaataatggatagctaactgtacagcagatctatgtttcaaaaacaagcaaactatgtaagtcttaaaacacatat |
46938492 |
T |
|
| Q |
207 |
ttgcaacttgcagtaaccaataatcaaatagtcatggccaccaacaaatgcataatttgcataatcactaccatattcttattaccttgtgccaaatcca |
306 |
Q |
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| T |
46938491 |
ttgcaacttgcagtaaccaataatcaaatagtcatggccaccaacaaatgcataatttgcataatcactaccatattcttattaccttgtgccaaatcca |
46938392 |
T |
|
| Q |
307 |
tccatttagattttccagcagttttcaactttggtgattcaaattctgataccggcacccttgttaccgctggttttgaaagcctttacccaccaaatgg |
406 |
Q |
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| T |
46938391 |
tccatttagattttccagcagttttcaactttggtgattcaaattctgataccggcacccttgttaccgctggttttgaaagcctttacccaccaaatgg |
46938292 |
T |
|
| Q |
407 |
acacacttactttcatctaccatcaggaagatactctgatg |
447 |
Q |
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| T |
46938291 |
acacacttactttcatctaccatcagggagatactctgatg |
46938251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 46939490 - 46939454
Alignment:
| Q |
316 |
attttccagcagttttcaactttggtgattcaaattc |
352 |
Q |
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| T |
46939490 |
attttccagcagttttcaacttaggtgattcaaattc |
46939454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 352
Target Start/End: Original strand, 36633514 - 36633545
Alignment:
| Q |
321 |
ccagcagttttcaactttggtgattcaaattc |
352 |
Q |
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| T |
36633514 |
ccagcagttttcaactttggtgattcaaattc |
36633545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 37439282 - 37439323
Alignment:
| Q |
317 |
ttttccagcagttttcaactttggtgattcaaattctgatac |
358 |
Q |
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|||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
37439282 |
ttttccagcaatattcaactttggagattcaaattctgatac |
37439323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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