View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8478_high_12 (Length: 463)

Name: NF8478_high_12
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8478_high_12
NF8478_high_12
[»] chr8 (10 HSPs)
chr8 (14-197)||(2956511-2956694)
chr8 (14-197)||(36557612-36557795)
chr8 (14-196)||(43048454-43048635)
chr8 (14-180)||(40978115-40978280)
chr8 (14-185)||(43634181-43634351)
chr8 (22-197)||(21594611-21594792)
chr8 (14-104)||(6610253-6610343)
chr8 (107-197)||(6602410-6602501)
chr8 (107-197)||(6677863-6677954)
chr8 (36-107)||(27424046-27424117)
[»] chr6 (3 HSPs)
chr6 (14-197)||(11455688-11455871)
chr6 (14-197)||(20219548-20219732)
chr6 (14-197)||(22113573-22113757)
[»] chr2 (10 HSPs)
chr2 (14-197)||(43589251-43589434)
chr2 (14-197)||(16256719-16256903)
chr2 (14-197)||(28809236-28809419)
chr2 (14-197)||(10356181-10356364)
chr2 (14-197)||(35733973-35734156)
chr2 (18-196)||(7758625-7758803)
chr2 (14-150)||(34209835-34209971)
chr2 (27-185)||(16255913-16256070)
chr2 (37-145)||(35860912-35861020)
chr2 (129-197)||(31917002-31917070)
[»] chr1 (17 HSPs)
chr1 (14-197)||(21373350-21373532)
chr1 (14-197)||(37661345-37661526)
chr1 (14-197)||(33506234-33506417)
chr1 (14-197)||(261107-261290)
chr1 (14-197)||(2326210-2326393)
chr1 (14-197)||(42887179-42887362)
chr1 (14-185)||(46833719-46833890)
chr1 (14-195)||(51621248-51621428)
chr1 (14-197)||(49622277-49622457)
chr1 (14-197)||(29743963-29744145)
chr1 (14-177)||(44565579-44565742)
chr1 (17-197)||(15545035-15545215)
chr1 (17-197)||(17306974-17307155)
chr1 (138-180)||(5154302-5154344)
chr1 (138-197)||(11385502-11385560)
chr1 (70-117)||(15431110-15431157)
chr1 (129-196)||(50376752-50376819)
[»] chr4 (19 HSPs)
chr4 (14-197)||(42739003-42739185)
chr4 (14-197)||(22443171-22443353)
chr4 (14-197)||(41279655-41279837)
chr4 (14-185)||(37564288-37564459)
chr4 (14-185)||(6884480-6884651)
chr4 (14-197)||(38023961-38024144)
chr4 (14-197)||(29119377-29119561)
chr4 (14-197)||(49283522-49283710)
chr4 (14-185)||(54976253-54976425)
chr4 (14-180)||(1921711-1921876)
chr4 (14-185)||(29191520-29191691)
chr4 (14-197)||(55874068-55874251)
chr4 (21-162)||(8067407-8067548)
chr4 (37-197)||(47498136-47498297)
chr4 (36-197)||(27651255-27651417)
chr4 (19-92)||(47968718-47968791)
chr4 (70-151)||(51576651-51576736)
chr4 (36-102)||(39592689-39592755)
chr4 (138-173)||(35234221-35234256)
[»] chr3 (4 HSPs)
chr3 (14-197)||(46484894-46485076)
chr3 (252-414)||(1447386-1447548)
chr3 (284-414)||(1425332-1425463)
chr3 (36-124)||(29085433-29085520)
[»] chr5 (9 HSPs)
chr5 (14-197)||(1751873-1752055)
chr5 (14-185)||(10329156-10329327)
chr5 (14-197)||(11725991-11726173)
chr5 (14-197)||(2956104-2956287)
chr5 (14-197)||(16617791-16617974)
chr5 (14-197)||(37276506-37276689)
chr5 (27-180)||(18672821-18672973)
chr5 (14-185)||(30404164-30404335)
chr5 (14-185)||(35384686-35384857)
[»] chr7 (9 HSPs)
chr7 (14-197)||(1828467-1828649)
chr7 (14-197)||(33119205-33119387)
chr7 (14-197)||(44118488-44118666)
chr7 (14-197)||(12313290-12313469)
chr7 (14-197)||(29008058-29008241)
chr7 (14-185)||(42027364-42027535)
chr7 (100-197)||(47646056-47646154)
chr7 (14-70)||(47646002-47646058)
chr7 (36-136)||(40040968-40041067)
[»] scaffold1251 (1 HSPs)
scaffold1251 (14-160)||(112-258)
[»] scaffold0735 (1 HSPs)
scaffold0735 (14-197)||(132-315)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 2956511 - 2956694
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2956511 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 2956610  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2956611 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 2956694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 36557612 - 36557795
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36557612 aataagcaatatattaaaaacacttaaatttttaataagaacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 36557711  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  36557712 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgaaggggagcaataaatgaacttataagggattttg 36557795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 43048454 - 43048635
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43048454 aataagcaatatattgaaa-cacttaaatttttaataaggacaattttgtcatttaaaaatgaatatgagaataattatgtcaatataattaaaattgca 43048552  T
Q  114 ttaaatcatttatctttccctcccctcccctcc-aaaaaactccaatttgagggggagcaataaatgaacttaaaagggatttt 196  Q
    ||||||||||||||||| | | |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43048553 ttaaatcatttatcttt-ctttccctcctctccaaaaaaactccaatttgagggggagcaataaatgaacttataagggatttt 43048635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 40978115 - 40978280
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||  ||||||||||||||    
T  40978115 aataagcaatatattgaaaacact-aaatttttaataaggacgattttgttatttaaaaataaatatgaagataattatgtcaacgtaattaaaattgca 40978213  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatga 180  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  40978214 ttaactcatttatctttccatcccctcccctccaaaaaactctaatttgagggggagcaataaatga 40978280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 43634181 - 43634351
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  43634181 aataagcaatatattgaaaacacctaa-tttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 43634279  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43634280 ttaactcatctctctgtccctcccctcccctccaaaaaacttcaatttgagggggagcaataaatgaactta 43634351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 21594792 - 21594611
Alignment:
Q  22 atatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatca 121  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |||    
T  21594792 atatattgaaaacacttaaattttaaataaggttgattttgtcatttaaaaataaatatgagaataattatgtcaatgtaattaaaattgcattaactca 21594693  T
Q  122 tttatctttccctcccctcccctc------caaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||| ||| |||| |||| |      |||||| |||||||||||||||||||||||||||| ||||  ||||||||||    
T  21594692 tttatcttccccccccccccccccccccctcaaaaacctccaatttgagggggagcaataaatgagcttacgagggattttg 21594611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 6610343 - 6610253
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataatt 104  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||||| |||||    
T  6610343 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttatcatttaaaaataaacatgaggataattatgtcaatgtaatt 6610253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 6602501 - 6602410
Alignment:
Q  107 aattgcattaaatcatttatctttccctcccctcccctccaaaaaactccaatttga-gggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||| |||| | ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||  ||||||||||    
T  6602501 aattgcattaactcatctttcttttcctcccctcccctccaaaaaacttcaatttgacggaggagcaataaatgaacttatgagggattttg 6602410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 6677954 - 6677863
Alignment:
Q  107 aattgcattaaatcatttatctttccctcccctcccctccaaaaaactccaatttga-gggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||| |||| | ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||  ||||||||||    
T  6677954 aattgcattaactcatctttcttttcctcccctcccctccaaaaaacttcaatttgacggaggagcaataaatgaacttatgagggattttg 6677863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 27424117 - 27424046
Alignment:
Q  36 cttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaa 107  Q
    |||||||||| |||||||| ||||||   |||| ||||| ||||| | ||||| ||||||||||||||||||    
T  27424117 cttaaattttcaataaggatgattttagtattttaaaataaatataaagataaatatgtcaatataattaaa 27424046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 11455688 - 11455871
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11455688 aataagcaatatattgacaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 11455787  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  11455788 ttaaatcatttatcttttcctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagagattttg 11455871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 20219548 - 20219732
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  20219548 aataagcagtatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgaggataattatgtcaatgtaattaaaattgca 20219647  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttga-gggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||   ||||||||||    
T  20219648 ttaactcatctttctttccctcccctcccctctagaaaactccaatttgaggggggagcaataaatgagcttctgagggattttg 20219732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 22113573 - 22113757
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  22113573 aataagcagtatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgaggataattatgtcaatgtaattaaaattgca 22113672  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttga-gggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||   ||||||||||    
T  22113673 ttaactcatctttctttccctcccctcccctctagaaaactccaatttgaggggggagcaataaatgagcttctgagggattttg 22113757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 43589434 - 43589251
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43589434 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaaggaatatgaggataattatgtcaatataattaaaattgca 43589335  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  43589334 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataattgaacttataagtgattttg 43589251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 16256719 - 16256903
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  16256719 aataagcaatatattgaaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatgtgaggataattatgtcaatataattaaaatttca 16256818  T
Q  114 ttaaatcatttatctttccctcccctcccctcc-aaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  16256819 ttaaaccatttatctttccctcccctcccctccaaaaaaactccaatttgagggggagcaataaatgaaattataagggattttg 16256903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 28809236 - 28809419
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||    
T  28809236 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgtggataattatgtcaatgtaattaaaattgca 28809335  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  28809336 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagcttatgagggattttg 28809419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 10356181 - 10356364
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  10356181 aataagaaatatgttgaaaacacttaaatttttaataaggacggatttttcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 10356280  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  10356281 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagcttatgagggattttg 10356364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 35734156 - 35733973
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| || |||| ||||||||||||||| ||||||||||||||    
T  35734156 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcattaaaaaataaacatgaagataattatgtcaatgtaattaaaattgca 35734057  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  35734056 ttaactcatctctctttccctctcctcccctccaaaaaactccaatttgagggggagcaataaatgagcttatgagggattttg 35733973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 7758803 - 7758625
Alignment:
Q  18 agcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaa 117  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  7758803 agcaatatgttgaaaacacttaaatttttaataaggatggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgcattaa 7758704  T
Q  118 atcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggatttt 196  Q
     |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||    
T  7758703 ctcatctctctttccctcccctcccctccaaaaaactccaatttgagggagagcaataaatgagcttatgagggatttt 7758625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 34209971 - 34209835
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  34209971 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattatgtcaacgtaattaaaattgca 34209872  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaa 150  Q
    |||| ||||||||||||||||||||||||||||||||    
T  34209871 ttaactcatttatctttccctcccctcccctccaaaa 34209835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 16255913 - 16256070
Alignment:
Q  27 ttgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcatttat 126  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||| |||||||||| |||||||||||||||||| |||| | |    
T  16255913 ttgaaaacacttaaatttttaataaggacggttttgttatttaaaaataaacatgaggatacttatgtcaatgtaattaaaattgcattaactcatctct 16256012  T
Q  127 ctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16256013 ctttccat-ccctcccctccaaaaaactccaatttgagggggagcaataaatgagctta 16256070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 35860912 - 35861020
Alignment:
Q  37 ttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcatttatctttccctcc 136  Q
    ||||||||||||||||||| |||||| || || ||||| |||||  |||| ||||||| ||||||||||||| || |||||||||| | || |||||| |    
T  35860912 ttaaatttttaataaggacaattttgacaatttaaaataaatatagggattattatgttaatataattaaaactgtattaaatcatctctccttcccttc 35861011  T
Q  137 cctcccctc 145  Q
    | |||||||    
T  35861012 cttcccctc 35861020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 31917070 - 31917002
Alignment:
Q  129 ttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||| ||| | ||||||||||||||||| ||| |||||||||||| | || |||||||||||    
T  31917070 ttccctccccttcccacaaaaaaactccaatttgatgggaagcaataaatgagcatataagggattttg 31917002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 21373532 - 21373350
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21373532 aataagcaatatattgaaa-cacttaaatttttaataaggatgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 21373434  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21373433 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 21373350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 37661526 - 37661345
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37661526 aataagcaatatattgaaa-cacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 37661428  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  37661427 ttaaatcatttatctttccct-tcctcccctccaaaaaactcaaatttgagggggagcaataaatgaacttataagggattttg 37661345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 33506234 - 33506417
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||  ||||||||||||||    
T  33506234 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattacgtcaacgtaattaaaattgca 33506333  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||   ||||||||||    
T  33506334 ttaactcatttatctttccctcccctcccctccaaaaaactccaatttgagggagagtaataaatgagcttttgagggattttg 33506417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 261290 - 261107
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  261290 aataagcaatatgttgaaaacacttaaatttttaataaggacggtttagtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 261191  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||    
T  261190 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggaacaataaatgagcttatgagggattttg 261107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 2326393 - 2326210
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  2326393 aataagtaatatgttgaaaacacttaaatttttaataaggacggatttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 2326294  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  2326293 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagcttatgagggattttg 2326210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 42887179 - 42887362
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  42887179 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 42887278  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||  ||||||||||    
T  42887279 ttaactcatctctctttccctcccctcccctccaaaaaactcaaatttgagtgggagcaataaatgagcttatgagggattttg 42887362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 46833719 - 46833890
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  46833719 aataagcaatatgttgaaaacacttaaatttttaataaggacaattttgtcatttaaaaataaacatgaggataattgtgtcaatgtaattaaaattgca 46833818  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| | || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  46833819 ttaacttatctctctttccctcccctcccctccaaaaaactccaatttgagggggaggaataaatgagctta 46833890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 51621428 - 51621248
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| || ||||||||| |||||||||| ||||||||||||||    
T  51621428 aataagcaatatgttgaaaacacttaaatttttaataaggacggatttttcatttaaaaataaacatgaggata-ttatgtcaatgtaattaaaattgca 51621330  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattt 195  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  51621329 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagcttatgagggattt 51621248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 49622457 - 49622277
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||  ||||||| ||||||||||||||    
T  49622457 aataagcaatatgttgaaaacacttaaatttttaataagaacggttttgtcatttaaaaataaacatgaggataat--tgtcaatgtaattaaaattgca 49622360  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  49622359 ttaaatcatctctcttt-cctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagcttacgagggattttg 49622277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 29743963 - 29744145
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||| ||||||||||||||   |||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  29743963 aataagcaatatgttgaaaacacttaagtttttaataaggacagatttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 29744062  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||    
T  29744063 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttga-ggggagcaataaatgagcttatgagggattttg 29744145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 44565579 - 44565742
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||    
T  44565579 aataagcaatatgttgaaaacacttaaatttttaataaggatggttttgtcatttaaaaataaacatgaggataattatatcaatgtaattaaaattgca 44565678  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaa 177  Q
    |||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44565679 ttaactcatctctctttccctcccctcccctccaaaaaaatccaatttgagggggagcaataaa 44565742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 15545035 - 15545215
Alignment:
Q  17 aagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcatta 116  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |||||||||||| ||||    
T  15545035 aagcaatatgttgaaaacacttaaatttttaataaggtcggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgaatta 15545134  T
Q  117 aatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    | |||| |  |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||  ||||||||||    
T  15545135 actcatctccctttccctcccctcccctgcaaaaaactccaatttgagggggagtaataaatgagcttatgagggattttg 15545215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 17307155 - 17306974
Alignment:
Q  17 aagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcatta 116  Q
    |||||||||  |||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||| ||||||||||||||| |    
T  17307155 aagcaatatgctgaaaacacttaaatttttaataaggacgattttattatttaaaaataaatttgaggataattatgtcaatgtaattaaaattgcatca 17307056  T
Q  117 aatcatttatctttccctcccctcccctccaa-aaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    | || | | ||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| | ||||  ||||||||||    
T  17307055 actcgtatctctttcctttccctcccctccaaaaaaactccaatttgaggggaagcaataaataagcttacgagggattttg 17306974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 5154344 - 5154302
Alignment:
Q  138 ctcccctccaaaaaactccaatttgagggggagcaataaatga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5154344 ctcccctccaaaaaactccaatttgagggggagcaataaatga 5154302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 11385502 - 11385560
Alignment:
Q  138 ctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||    
T  11385502 ctcccctccaaaaaactccaatttga-ggggagcaataaatgagcttatgagggattttg 11385560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 15431110 - 15431157
Alignment:
Q  70 aaaatgaatatgaggataattatgtcaatataattaaaattgcattaa 117  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| |||||    
T  15431110 aaaataaatgtgagaataattatgtcaatataattaaaattgtattaa 15431157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 50376752 - 50376819
Alignment:
Q  129 ttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggatttt 196  Q
    ||||||||||| ||| | ||||||||||||||| | ||| |||||||||||| | || ||||||||||    
T  50376752 ttccctccccttcccacaaaaaaactccaatttaatgggaagcaataaatgagcatataagggatttt 50376819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 42739185 - 42739003
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42739185 aataagcaatatattgaaaacacctaa-tttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattaca 42739087  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42739086 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 42739003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 22443353 - 22443171
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  22443353 aataagcaatatattgaaaacact-aaatttttaataaggacgattttgttatttaaaaataaatatgaggataattatgtcaacgtaattaaaattgca 22443255  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||    
T  22443254 ttaactcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagcttttgagggattttg 22443171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 41279655 - 41279837
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  41279655 aataagcaatatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgaggataataatgtcaatgtaattaaaattgca 41279754  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||    
T  41279755 ttaactcatttttctttccctcccctcccctccaaaaaactccaatttga-ggggagcaataaatgagcttatgagggattttg 41279837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 37564288 - 37564459
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  37564288 aataagcaatatgttgaaaacacttaaatttttaataaggacagttttgtcatttaaaaataaacatgaggataattatgtcaatctaattaaaattgca 37564387  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37564388 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagctta 37564459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 6884651 - 6884480
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||    
T  6884651 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaatttaaattgca 6884552  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6884551 ttaactcgtctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagctta 6884480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 38024144 - 38023961
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||| |||||  |||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  38024144 aataaacaatacgttgaaaacacttaaatttttaataagaacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 38024045  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38024044 ttaactcatctctctttccctctcctcccctccaaaaaactccaatttgagggggagcaataaatgaacttatgagggattttg 38023961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 29119377 - 29119561
Alignment:
Q  14 aataagcaatatattgaaaacacttaaa-tttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgc 112  Q
    ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  29119377 aataaacaatatattgaaaacacttaaaatttttaataaggatgattttgtcatttaaaaataaatatgaggataattatgtgaatgtaattaaaattgc 29119476  T
Q  113 attaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||| || |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  29119477 attaactcgtttatgattccctcacctcccctccaaaaaactccaatttgagggggagcaataaatgagcttacgagggattttg 29119561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 49283710 - 49283522
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  49283710 aataagcaatatattgaaaacacttaaatatttaataagaatgattttgacatttaaaaataaatatgaggataattatgtcaatgtaattaaaattgca 49283611  T
Q  114 ttaaatcatttatctttccctcccctccc-----ctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| ||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||    
T  49283610 ttaactcatttatctttccctcccctcccctcccctccaaaaaactccaatttaagggggagcaataaatgagcttatgagggattttg 49283522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 54976253 - 54976425
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  54976253 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 54976352  T
Q  114 ttaaatcatttatctttccctcccctcccctcc-aaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  54976353 ttaactcatctctctttccctcccctcccctccaaaaaaacttcaatttgagggggagcaataaatgagctta 54976425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 1921711 - 1921876
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||  ||||||||||  ||    
T  1921711 aataagcaatatattgaaaacacttaaatttttaataaggacgatttcgttatttaaaaataaatatgaggataattatgtcaacgtaattaaaatatca 1921810  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatga 180  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1921811 ttaactcatttatctttccctcccctcccctccaaaaagctccaatttga-ggggagcaataaatga 1921876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 29191520 - 29191691
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||| || |||| ||||||||||||||| | ||||||||||||    
T  29191520 aataagtaatatgttgaaaacacttaaatttttaataaggacggatttgtcatttaaaaataaacatgatgataattatgtcaatgtgattaaaattgca 29191619  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29191620 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgagctta 29191691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 55874068 - 55874251
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  55874068 aataagcaatatgttgaaaacacttaaatttttaataatgatgattttgtcttttaaaaataaatataaggataattatgtcaatgtaattaaaattgca 55874167  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |||  ||||||||||    
T  55874168 ttaactcatctttctttccctcccctcccctccaaaaaactccaatttgaaggggagcagtaaatgagtttatgagggattttg 55874251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 8067407 - 8067548
Alignment:
Q  21 aatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatc 120  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  8067407 aatatattgaaaatacttaaatttttaataaggacaattttgtcatttaaacataaatatgaggataattatgtctatataattaaaattgtattaactc 8067506  T
Q  121 atttatctttccctcccctcccctccaaaaaactccaatttg 162  Q
     | | ||||| ||||| || ||||||||||||||||||||||    
T  8067507 gtctctcttttcctcctcttccctccaaaaaactccaatttg 8067548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 47498136 - 47498297
Alignment:
Q  37 ttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcatttatctttccctcc 136  Q
    ||||||||||||||||||||| |||   |||| ||||| |||||||||||||||||||||||||||||||||||| || || |||| | || ||  ||||    
T  47498136 ttaaatttttaataaggacgacttttctattttaaaataaatatgaggataattatgtcaatataattaaaattgtatcaattcatctctccttgtctcc 47498235  T
Q  137 cctcccc-tccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||  |||  ||||||||||    
T  47498236 cctccccttcaaaaaaactccaatttgaggggaagcaataaatgagtttacgagggattttg 47498297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 27651417 - 27651255
Alignment:
Q  36 cttaaatttt-taataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcatttatc-tttccc 133  Q
    |||||||||| |||||||||| | |||| ||||| ||||| |||||||||||||||||||||||||| |||| |||  ||||| ||||||||| |||||     
T  27651417 cttaaattttgtaataaggacaactttgacattttaaaataaatatgaggataattatgtcaatatagttaatattttattaactcatttatcatttcca 27651318  T
Q  134 tcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||  |||  | ||||||||| |||||||| ||||||||||||||||  |||  ||||||||||    
T  27651317 tcctttccgat-caaaaaacttcaatttgaaggggagcaataaatgagtttatgagggattttg 27651255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 47968718 - 47968791
Alignment:
Q  19 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattat 92  Q
    ||||||| || |||||| |||||||||||||||||| |||||| |||||||||||| |||| || |||||||||    
T  47968718 gcaatatgttaaaaacatttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattat 47968791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 51576736 - 51576651
Alignment:
Q  70 aaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatc----atttatctttccctcccctcccctccaaaaa 151  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    || |||||||||||||| ||| |||||||||    
T  51576736 aaaataaatatgaggataattatgtctatataattaaaattgtattaattcatctatatatctttccctcccatcctctccaaaaa 51576651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 39592755 - 39592689
Alignment:
Q  36 cttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataa 102  Q
    |||||||||||||| ||||||| |||| ||||  ||||| |||||||||||||||||| ||||||||    
T  39592755 cttaaatttttaatgaggacgactttgacattgtaaaataaatatgaggataattatgacaatataa 39592689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 35234221 - 35234256
Alignment:
Q  138 ctcccctccaaaaaactccaatttgagggggagcaa 173  Q
    |||||||||||||||||||||||||||||| |||||    
T  35234221 ctcccctccaaaaaactccaatttgaggggaagcaa 35234256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 46485076 - 46484894
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46485076 aataagcaatatattgaaaacacttaaatttttaataagga-gattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 46484978  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46484977 ttaaatcatttatctttccctccactcctctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 46484894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 252 - 414
Target Start/End: Original strand, 1447386 - 1447548
Alignment:
Q  252 aagtaacaagtaaatatagtaagagatatataagttaacacgtttcagaaactaatgtccgatattcaacttcaaatgatgatctagaaatggtatttta 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1447386 aagtaacaagtaaatatagtaagagatatataagttaacacgtttcagcaactaatgtccgatattcaacttcaaatgatgatctagaaatggtatttta 1447485  T
Q  352 ctttttggttctctatgaaatgagataagaaacaaaatgaagcatgagcctgagaaatatatc 414  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  1447486 ctttttggttctctatgaaatgagataagaaccaaaatgaagcatgagcccgagaaatatatc 1447548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 284 - 414
Target Start/End: Original strand, 1425332 - 1425463
Alignment:
Q  284 agttaacacgtttcagaaactaatgtccgatattcaacttcaaatgatgatctagaaatggtattttactttttggttctctatgaaatgagataagaaa 383  Q
    |||||||| ||| ||| | |||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  1425332 agttaacaagttgcagtagctaatgcccaatattcaacttcaaatgacgatctagaaatggtattttacttttttgttctctatgaaatgagataagaac 1425431  T
Q  384 caa-aatgaagcatgagcctgagaaatatatc 414  Q
    ||| || |||||||||||||||||||||||||    
T  1425432 caataaagaagcatgagcctgagaaatatatc 1425463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 29085520 - 29085433
Alignment:
Q  36 cttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcattt 124  Q
    |||||||||||| ||||||| |||||| ||||| ||||| |||| |||||||| |||||  || |||||||||||| ||||| ||||||    
T  29085520 cttaaatttttagtaaggacaattttggcattttaaaataaatacgaggataa-tatgttcatgtaattaaaattgtattaactcattt 29085433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 1751873 - 1752055
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1751873 aataagcagtatattgaaa-cacttaaattttaaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 1751971  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1751972 ttaaataatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 1752055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 10329327 - 10329156
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10329327 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcattttaaaatgaatatgaggataattatgtcaatataattaaaattgca 10329228  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  10329227 ttaaatcatttatctttccctcccctcccctccaaaaaacttcaatttgagggggagcaataaataaactta 10329156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 11726173 - 11725991
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11726173 aataagcagtatattgaaa-cacttaaattttaaataaggacgattttgtcatttaagaatgaatatgaggataattatgtcaatataattaaaattgca 11726075  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11726074 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 11725991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 2956104 - 2956287
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2956104 aataagcaatatattgaaa-cacttaaatttttaataaggacgattttttcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 2956202  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttga-gggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  2956203 ttaaatcatttatctttcccttccctcccctccaaaaaactccaatttaaggggggagcaataaatgaacttataagggattttg 2956287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 16617974 - 16617791
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  16617974 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatataattaaaattgca 16617875  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||    
T  16617874 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgatggggagcaataaatgagcttatgagggattttg 16617791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 37276506 - 37276689
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||    
T  37276506 aataagcaatatattgaaaacacttcaatttttaacaaggaagattttgtcatttataaataaatataaggataattatgtcaatgtaattaaaattgca 37276605  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||  ||||||||||    
T  37276606 ttaactcatttatctttccctcccctctcttccaaaaaactccaatttgaggaggagcaataaatgagcttatgagggattttg 37276689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 18672973 - 18672821
Alignment:
Q  27 ttgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcatttat 126  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| | |    
T  18672973 ttgaaaacacttaaatttttaataaggacggttttatcatttaaaaataaacatgaggataattatgtcaatataattaaaattgcattaactcatatct 18672874  T
Q  127 ctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatga 180  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  18672873 ctttccctccactcccctccaaaaaactccaatttga-ggggagcaataaatga 18672821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 30404335 - 30404164
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||    
T  30404335 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgttaatgtaattaaaattgca 30404236  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | | |||| |||||||||||||||||||||| |||||||||| ||||| |||||||| ||||    
T  30404235 ttaactcatctctttttctctcccctcccctccaaaaaacttcaatttgaggaggagccataaatgagctta 30404164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 35384686 - 35384857
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||| ||||||||||||||    
T  35384686 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacaggaggataattatgtcaatgtaattaaaattgca 35384785  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | |||||| | |||||||  |||||||||||||||||||||| |||||||||||||| ||||    
T  35384786 ttaactcatctctctttctcccccctccggtccaaaaaactccaatttgaggaggagcaataaatgagctta 35384857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 1828467 - 1828649
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||| | |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1828467 aataagtagtatattgaaa-cacttaaattttaaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 1828565  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1828566 ttaaatcatttatctttccctcctctcccctccaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 1828649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 33119205 - 33119387
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33119205 aataagcaatatattgaaa-cacttaaatttttaataaggacaattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 33119303  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  33119304 ttaaatcatttatctttccctttcctcccctccaaaaaacttcaatttgagggggagcaataaataaacttataagggattttg 33119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 44118666 - 44118488
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44118666 aataagcaatatattgaaaacacttaaatttttaataagaacaattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 44118567  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||||||     |||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  44118566 ttaaatcatttatctttccctccc-----ctccaaaacactccaatttgagggggagcaataaatgaacttataagggattttg 44118488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 12313469 - 12313290
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12313469 aataaacaatatattgaaaacacttaaatttttaataaggatgattttgtcatttaaaaatgaatgtgaggataattatgtcaatataattaaaattgca 12313370  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  12313369 ttaaatcatttatctttccctcccctcca----aaaaaactccaatttgagggggagcaataaatgagcttatgagggattttg 12313290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 29008241 - 29008058
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||| ||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  29008241 aataagtaatatgttgaaaacacttaaatttttaataaggacggatttatcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 29008142  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  29008141 ttaactcatctctctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaattaacttatgagggattttg 29008058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 42027535 - 42027364
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||    
T  42027535 aataagcaatatgttgaaagcacttaaatttttaataatgacgattttgtcatttaaaaataaatatgaaaataattatgtcaatgtaattaaaattgca 42027436  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaactta 185  Q
    |||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  42027435 ttaactcatctttctttccctcccctcccctccaaaaaacttcaatttgagggggagcaataaatgagctta 42027364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 47646056 - 47646154
Alignment:
Q  100 taattaaaattgcattaaatcatttatctttccctcccctcccctcc-aaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47646056 taattaaaattgcattaaatcatttatctttccctcccctcccctccaaaaaaactccaatttgagggggagcaataaatgaacttataagggattttg 47646154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 47646002 - 47646058
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaa 70  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47646002 aataagtaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaa 47646058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 40040968 - 40041067
Alignment:
Q  36 cttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgcattaaatcatttatctttccctc 135  Q
    ||||| |||||| || ||||||||| | ||||| ||||| ||||| ||||||||||||| ||| | |||||||||  ||||| || | |||| |||||||    
T  40040968 cttaagtttttagtagggacgattt-gacattttaaaataaatataaggataattatgtaaattttattaaaattttattaactcttctatccttccctc 40041066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 112 - 258
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112 aataagcaatatattaaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 211  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  212 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatt 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 132 - 315
Alignment:
Q  14 aataagcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaaaattgca 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  132 aataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaaaattgca 231  T
Q  114 ttaaatcatttatctttccctcccctcccctccaaaaaactccaatttgagggggagcaataaatgaacttaaaagggattttg 197  Q
    |||| |||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||  ||||||||||    
T  232 ttaactcatctctctttccctcccctcccctccaaaaaactcaaatttgagtgggagcaataaatgagcttatgagggattttg 315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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