View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_high_13 (Length: 455)
Name: NF8478_high_13
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 24 - 440
Target Start/End: Original strand, 6009977 - 6010393
Alignment:
| Q |
24 |
ctggaaaaccacggcaagagaaacattaaacataccccgtagacggaatatgtatagaccccatcaccaaccatcctctgacaatcagactttaacaaag |
123 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6009977 |
ctggaaaaccacgacaagagaaacattaaacataccccgtagacggaatatgtatagaccccatcaccaaccatcctctgacaatcagactttaacaacg |
6010076 |
T |
|
| Q |
124 |
cgaaatcctctcctttcttactttgtccagcttgaccatgaacaatctcaggcttctcaattttctcgctcatcaactcccgcttcaatagaaccgaaag |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6010077 |
cgaaatcctctcctttcttactctgtccagcttgaccatgaacaatctcaggcttctcaattttctcgctcatcaactcccgcttcaatagaaccgaaag |
6010176 |
T |
|
| Q |
224 |
aggaaccgtatgatggtgttcactcctcacagacattgttctttcccctcctaatatatcctcaaattctcaataccaacaattagactcaacttttata |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6010177 |
aggaacggtatgatggtgttcactcctcacagacattgttctttcccctcgtaatatatcctcaaattctcaataccaacaattagactcaacttttata |
6010276 |
T |
|
| Q |
324 |
ccaaaacaacaacaatgtgcgcttctcacaataatccttcgttatatgctataacaatcaaatcctgaataacctcgagacagagttcaaatcaatccaa |
423 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6010277 |
ccaaaacaacaacaatgtgcgcttctcgctataatccttcgttatatgctataacaatcaaatcctgaataacctcgagacagagttcaaatcaatccaa |
6010376 |
T |
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| Q |
424 |
gcgatagagttcaaatt |
440 |
Q |
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||||||||||||||||| |
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| T |
6010377 |
gcgatagagttcaaatt |
6010393 |
T |
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Back To:
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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 19471604 - 19471712
Alignment:
| Q |
225 |
ggaaccgtatgatggtgttcactcctcacagacattgttctttcccctcctaatatatcctcaaattctcaataccaacaattagactcaacttttatac |
324 |
Q |
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|||||||| |||||| |||||||||| |||||| |||||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||| |
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| T |
19471604 |
ggaaccgtttgatggcgttcactcctagcagacactgttctttgccctcctaaa-----ctcaaattctcaatactaacaactagacttgacttttatac |
19471698 |
T |
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| Q |
325 |
caaaacaacaacaa |
338 |
Q |
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|||||| ||||||| |
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| T |
19471699 |
caaaacgacaacaa |
19471712 |
T |
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