View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_high_26 (Length: 250)
Name: NF8478_high_26
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 12922848 - 12923085
Alignment:
| Q |
12 |
gaacaaaagatgatcatgtcacaaccacaaactgtccatttgtagctactacttgattccataatcatgttgtaatatcnnnnnnnnnnattaaaatgtt |
111 |
Q |
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| T |
12922848 |
gaacaaaagatgatcatgtcacaacgacaaactgtccatttgtagctactacttgattccataatcatgttgtaatatcttttttttt-attaaaatgtt |
12922946 |
T |
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| Q |
112 |
cactttctaaaaactaaaattgatacagatgattgaatattttgctcatatctgctgtgatttgggttcagatgtgagatttcagaattgatatattata |
211 |
Q |
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| T |
12922947 |
cactttctaaaaactaaaattgatacagatgattgaatattttgctcatatctgctgtgatttgggttcagatgtaagatttcagaattgatatattata |
12923046 |
T |
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| Q |
212 |
cacaaattatattgtaaatttttagtgaagtggttctct |
250 |
Q |
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| T |
12923047 |
cacaaattatattgtaaatttttagtgaagtggttctct |
12923085 |
T |
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