View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_high_30 (Length: 241)
Name: NF8478_high_30
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52714609 - 52714386
Alignment:
| Q |
1 |
tatactacttttacttctcttaaaataagaatactccttcatggttgtgtgtgttggacgttgctgaattcaaccatgttctcatctctcacagatgatt |
100 |
Q |
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| T |
52714609 |
tatactacttttacttctcttaaaatatgaatactccttcatggttgtgtgtgctggacgttgctgaattcaaccatgttctcatctctcacagatgatt |
52714510 |
T |
|
| Q |
101 |
ctttcccattgtgataaatagccaccatcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52714509 |
ctttcccattgtgataaatagccaccatcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcatt |
52714410 |
T |
|
| Q |
201 |
aagattattccttagccacccttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
52714409 |
aagattattccttagccacccttt |
52714386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 52723628 - 52723408
Alignment:
| Q |
3 |
tactacttttacttctcttaaaataagaatactccttcatggttgtgtgtgttggacgttgctgaattcaaccatgttctcatctctcacagatgattct |
102 |
Q |
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||||||| ||||||||||||||| | |||| |||||| |||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
52723628 |
tactactattacttctcttaaaa-atgaatcctccttaatggttacgtgtgatggacgttacttaattcaaccatgttctcatctctcacagatgattct |
52723530 |
T |
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| Q |
103 |
ttcccattgtgataaatagccaccatcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52723529 |
ttcccattgtgataaatagccaccatcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaa |
52723430 |
T |
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| Q |
203 |
gattattccttagccacccttt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
52723429 |
gattattccttagccacccttt |
52723408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 52700334 - 52700131
Alignment:
| Q |
1 |
tatactacttttacttctcttaaaataagaatactccttcatggttgtgtgtgttggacgttgctgaattcaaccatgttctcatctctcacagatgatt |
100 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| |||||| |||| |||||||| || |||||||||||||||| |||||||||| |||| |
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| T |
52700334 |
tatactgctattacttctcttaaaatatgaatactcctt-atggttatgtgcactggacgttacttaattcaaccatgttcttatctctcacaatcgatt |
52700236 |
T |
|
| Q |
101 |
ctttcccattgtgataaatagccaccatcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcatt |
200 |
Q |
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||||||| |||| | |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
52700235 |
ctttccccttgtaacaaatagccaccaccaaataaaccaagaaattgacagcattgagaactgtcaatatccagaagaaccaatccaacctgctttcatt |
52700136 |
T |
|
| Q |
201 |
aagat |
205 |
Q |
| |
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||||| |
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|
| T |
52700135 |
aagat |
52700131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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