View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8478_high_33 (Length: 237)
Name: NF8478_high_33
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 48966813 - 48966983
Alignment:
| Q |
43 |
tctactagttagtattcattcatccattacattcttattttattcttctcaaccaaagcaaattaagccacttctctatcttatttgctttatgatgttt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966813 |
tctactagttagtattcattcatccattacattcttattttattcttctcaagcaaagcaaattaagccacttctctatcttatttgctttatgatgttt |
48966912 |
T |
|
| Q |
143 |
agcaaaagctataaacaagttcatcaccatgggcatggaggaagaagagcaacaaagatttaaagtacctgtgaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
48966913 |
agcaaaagctataaacaagttcatcac------catggaggaagaagagcaacaaagttttacagtacctgtgaatt |
48966983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University