View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_high_40 (Length: 204)
Name: NF8478_high_40
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_40 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 79844 - 80014
Alignment:
| Q |
19 |
acaaatcactgcaaatatttacaacataaaaaggaaagaaattaataaaagcaatacaaagtagctaaaacagttaaaacccaaatgtcctatttatttc |
118 |
Q |
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| T |
79844 |
acaaatcactgcaaatatttacaacataaaaaggaaagaaattaacaaaagcaatacaaagtagctaaaatagttaaaacccaaatctcctatttatttg |
79943 |
T |
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| Q |
119 |
acagagaagtctccgaggacatacataaaacatatttttattttctgttgtca-tttttctgcatgttcat |
188 |
Q |
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| T |
79944 |
acagagaagtctccgaggacatacataaaacaaatttttattttctgttgtcattttttctgcatgttcat |
80014 |
T |
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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 22391563 - 22391628
Alignment:
| Q |
97 |
acccaaatgtcctatttatttcacagagaagtctccgaggacatacataaaacatatttttatttt |
162 |
Q |
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| T |
22391563 |
acccaaatcttctatttatttgacagagaagtctccgaggacatacataaaacaaatttttatttt |
22391628 |
T |
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