View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_high_6 (Length: 513)
Name: NF8478_high_6
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 498
Target Start/End: Original strand, 6009903 - 6010393
Alignment:
| Q |
8 |
cagaacctgtgcaaaatgcatcaaattaaaacctgtaaccaatcaagtccaaataacaaaaacagtcatcgaatctggaaaaccacggcaagagaaacat |
107 |
Q |
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| T |
6009903 |
cagaacatgtgcaaaatgcatcaaattaaaacctgtaaccaatcaagtccaaataacaaaaacagtcatcgaaactggaaaaccacgacaagagaaacat |
6010002 |
T |
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| Q |
108 |
taaacataccccgtagacggaatatgtatagaccccatcaccaaccatcctctgacaatcagactttaacaaagcgaaatcctctcctttcttactttgt |
207 |
Q |
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| T |
6010003 |
taaacataccccgtagacggaatatgtatagaccccatcaccaaccatcctctgacaatcagactttaacaacgcgaaatcctctcctttcttactctgt |
6010102 |
T |
|
| Q |
208 |
ccagcttgaccatgaacaatctcaggcttctcaattttctcgctcatcaactcccgcttcaatagaaccgaaagaggaaccgtatgatggtgttcactcc |
307 |
Q |
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| T |
6010103 |
ccagcttgaccatgaacaatctcaggcttctcaattttctcgctcatcaactcccgcttcaatagaaccgaaagaggaacggtatgatggtgttcactcc |
6010202 |
T |
|
| Q |
308 |
tcacagacattgttctttcccctcctaatatatcctcaaattctcaataccaacaattagactcaacttttataccaaaacaacaacaatgtgcgcttct |
407 |
Q |
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| T |
6010203 |
tcacagacattgttctttcccctcgtaatatatcctcaaattctcaataccaacaattagactcaacttttataccaaaacaacaacaatgtgcgcttct |
6010302 |
T |
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| Q |
408 |
cacaataatccttcgttatatgctataacaatcaaatcctgaataacctcgagacagagttcaaatcaatccaagcgatagagttcaaatt |
498 |
Q |
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| T |
6010303 |
cgctataatccttcgttatatgctataacaatcaaatcctgaataacctcgagacagagttcaaatcaatccaagcgatagagttcaaatt |
6010393 |
T |
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Back To:
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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 396
Target Start/End: Original strand, 19471604 - 19471712
Alignment:
| Q |
283 |
ggaaccgtatgatggtgttcactcctcacagacattgttctttcccctcctaatatatcctcaaattctcaataccaacaattagactcaacttttatac |
382 |
Q |
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|||||||| |||||| |||||||||| |||||| |||||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||| |
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| T |
19471604 |
ggaaccgtttgatggcgttcactcctagcagacactgttctttgccctcctaaa-----ctcaaattctcaatactaacaactagacttgacttttatac |
19471698 |
T |
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| Q |
383 |
caaaacaacaacaa |
396 |
Q |
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|||||| ||||||| |
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| T |
19471699 |
caaaacgacaacaa |
19471712 |
T |
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