View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8478_high_7 (Length: 504)
Name: NF8478_high_7
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_high_7 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 12176818 - 12177286
Alignment:
| Q |
15 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
12176818 |
atgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggatttttttgaa |
12176917 |
T |
|
| Q |
112 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12176918 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctg |
12177017 |
T |
|
| Q |
212 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatga |
311 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12177018 |
gttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaatga |
12177117 |
T |
|
| Q |
312 |
aagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgtt |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12177118 |
aagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtaacttagaaagaagtctgtt |
12177217 |
T |
|
| Q |
412 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcata |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12177218 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcata |
12177286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 12421246 - 12421714
Alignment:
| Q |
15 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
12421246 |
atgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggatttttttgaa |
12421345 |
T |
|
| Q |
112 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12421346 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctg |
12421445 |
T |
|
| Q |
212 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatga |
311 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12421446 |
gttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaaattatctagaagttctaaagtacgaacatcatctagtacaatga |
12421545 |
T |
|
| Q |
312 |
aagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgtt |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12421546 |
aagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtaacttagaaagaagtctgtt |
12421645 |
T |
|
| Q |
412 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcata |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12421646 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcata |
12421714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 12188139 - 12188608
Alignment:
| Q |
15 |
atgaaccaagaactttcaaagccaaagggttgccggc---ataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
12188139 |
atgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgttgaa |
12188238 |
T |
|
| Q |
112 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
12188239 |
agcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctg |
12188338 |
T |
|
| Q |
212 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
12188339 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaatga |
12188438 |
T |
|
| Q |
312 |
aagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgtt |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
12188439 |
aagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtagcttagaaagaagtctgtt |
12188538 |
T |
|
| Q |
412 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcatat |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12188539 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactaccttcatat |
12188608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 12432567 - 12433036
Alignment:
| Q |
15 |
atgaaccaagaactttcaaagccaaagggttgccggc---ataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
12432567 |
atgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgttgaa |
12432666 |
T |
|
| Q |
112 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
12432667 |
agcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctg |
12432766 |
T |
|
| Q |
212 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
12432767 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctgctccaatcaaattatttagaagttctaaaatacgaacatcatctagtacaatga |
12432866 |
T |
|
| Q |
312 |
aagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgtt |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
12432867 |
aagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaatatgaagatcttcccctagtagcttagaaagaagtctgtt |
12432966 |
T |
|
| Q |
412 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcatat |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12432967 |
gtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactaccttcatat |
12433036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 9393984 - 9394372
Alignment:
| Q |
15 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
111 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| |||||||| |||| || ||| |
|
|
| T |
9393984 |
atgaacccataactttcaaagccaaagagtcgccttttgcataagaaactacattatttgatatctcctcatacccctcattcggaacgattttgttgaa |
9394083 |
T |
|
| Q |
112 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
9394084 |
agcattcaaactgaacaacctgatggagttttgaaagttcatttccttaacttgaagaatttcgtcaatccctctgcctatcaacacatgcttatctctg |
9394183 |
T |
|
| Q |
212 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatga |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || || |||||||||| |
|
|
| T |
9394184 |
gttgtcacaatttctctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttttaaagtatgaatgtcgtctagtacaatga |
9394283 |
T |
|
| Q |
312 |
aagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaa |
400 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
9394284 |
aagctttcatgtgtttgagtctttacataaccatagatgatattactttgggagtgtcaataccaagatcttccgctattaacttagaa |
9394372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 136 - 480
Target Start/End: Complemental strand, 32633728 - 32633384
Alignment:
| Q |
136 |
ggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctacca |
235 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||| || || || ||||||||| |||||||| |
|
|
| T |
32633728 |
ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca |
32633629 |
T |
|
| Q |
236 |
gctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttt |
335 |
Q |
| |
|
|||| || ||| ||| ||| ||||||||||| |||| |||||||| |||||| |||||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
32633628 |
tctcctagccaaccattcccgactccaatcaagttttgcagaagttccaaagtatgaacatcatctagtacaatgaaagatttcatgcgtttgagtcttc |
32633529 |
T |
|
| Q |
336 |
tcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtct |
435 |
Q |
| |
|
|||| | ||| |||| ||||||||||| || |||||| ||||||||| || ||||||||||||||||||| ||||| || || || ||| ||||| || |
|
|
| T |
32633528 |
tcatgatcatggatggtattactttggcagattcaatatcaagatcttcccttagtaacttagaaagaagtttgttgcatatgaaattgattccatgcct |
32633429 |
T |
|
| Q |
436 |
ctttgattcttctgtgacattttctaggaagcaactaccttcata |
480 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
32633428 |
ttttgatacttctgtcacattttctaagaagcaactgccttcata |
32633384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 110 - 481
Target Start/End: Original strand, 6310084 - 6310455
Alignment:
| Q |
110 |
aaagcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctc |
209 |
Q |
| |
|
||||||||||| ||||| | | || ||| ||||| || ||||| | |||||||| || ||||| ||||| ||||| | |||| ||||||||||| | |
|
|
| T |
6310084 |
aaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccc |
6310183 |
T |
|
| Q |
210 |
tggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaat |
309 |
Q |
| |
|
| || |||||||||||| ||||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | |||||||| | |||||| |
|
|
| T |
6310184 |
tagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtacatcatctattacaat |
6310283 |
T |
|
| Q |
310 |
gaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctg |
409 |
Q |
| |
|
||||| |||||||| |||||||||| |||| | ||| |||| ||||| ||||| ||| |||||| ||||||||| || |||||||| ||||||||| || |
|
|
| T |
6310284 |
gaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatatcaagatcttccctgagtaacttggaaagaagtttg |
6310383 |
T |
|
| Q |
410 |
ttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcatat |
481 |
Q |
| |
|
||| |||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||||||| ||||||||| |
|
|
| T |
6310384 |
ttgcatgtgtaattgatcccatgtctctttgatacttctgttaccttttctaagaagcaactgccttcatat |
6310455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 196 - 488
Target Start/End: Complemental strand, 5550190 - 5549898
Alignment:
| Q |
196 |
cacatgcttatctctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaaca |
295 |
Q |
| |
|
|||||| ||||| || || |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | ||| |
|
|
| T |
5550190 |
cacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtaca |
5550091 |
T |
|
| Q |
296 |
tcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaact |
395 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| | | | ||| |||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
5550090 |
tcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagtaact |
5549991 |
T |
|
| Q |
396 |
tagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcatatatgaaag |
488 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| ||| | || |||||| ||||||| || ||||| | ||||||||| || |||||| |||||| |
|
|
| T |
5549990 |
tagaaagaagtttgttgcatgtgtaattgattccacgactttttgatacttctgtaaccttttcaaagaagcaactgccatcatatttgaaag |
5549898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 140 - 469
Target Start/End: Complemental strand, 13165338 - 13165009
Alignment:
| Q |
140 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
239 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||| ||||||||||| | ||| |||||||||||| || || |||||||||||| |||||||||||| |
|
|
| T |
13165338 |
ttttgggagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctc |
13165239 |
T |
|
| Q |
240 |
caaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcat |
339 |
Q |
| |
|
| | ||| |||| || ||||||||||| |||| ||||||||| | ||| | || ||||| ||||||||||||| |||||||| |||||||||| || | |
|
|
| T |
13165238 |
ctaaccaaccatgtcccactccaatcaagttttgtagaagttccgaggtatgtacgtcatctagtacaatgaaagatttcatgcgtttgagtcttctcct |
13165139 |
T |
|
| Q |
340 |
aaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctcttt |
439 |
Q |
| |
|
| ||| |||| |||||||||| |||| |||| |||| |||| |||||||||||| ||||||||| ||||| |||||| | ||| ||||| | | | |
|
|
| T |
13165138 |
gatcatggatggtattactttgagagtggtaatatcaaggtcttcccctagtaacttggaaagaagtttgttgcatgtgtcattgattccatgcttttct |
13165039 |
T |
|
| Q |
440 |
gattcttctgtgacattttctaggaagcaa |
469 |
Q |
| |
|
|||| |||||| |||||||||| ||||||| |
|
|
| T |
13165038 |
gattgttctgtcacattttctaagaagcaa |
13165009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 196 - 488
Target Start/End: Original strand, 5607739 - 5608031
Alignment:
| Q |
196 |
cacatgcttatctctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaaca |
295 |
Q |
| |
|
|||||| ||||| || || |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | ||| |
|
|
| T |
5607739 |
cacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtaca |
5607838 |
T |
|
| Q |
296 |
tcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaact |
395 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| | | | ||| |||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
5607839 |
tcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagtaact |
5607938 |
T |
|
| Q |
396 |
tagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcatatatgaaag |
488 |
Q |
| |
|
|| |||||||| ||||| |||||||| ||| ||||| || |||||| ||||||| || || || | ||||||||| || |||||| |||||| |
|
|
| T |
5607939 |
tacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgccatcatatttgaaag |
5608031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 196 - 488
Target Start/End: Complemental strand, 5627631 - 5627339
Alignment:
| Q |
196 |
cacatgcttatctctggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaaca |
295 |
Q |
| |
|
|||||| ||||| || || |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||| |||| ||||||||| || || | ||| |
|
|
| T |
5627631 |
cacatgtttatccctagtagtcacaatgactgtactaccagatcctagccaaccatgtcctactccaatcaagttttgcagaagttctgaattatgtaca |
5627532 |
T |
|
| Q |
296 |
tcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaact |
395 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| | | | ||| |||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
5627531 |
tcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatatcaagatcttcttttagtaact |
5627432 |
T |
|
| Q |
396 |
tagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactaccttcatatatgaaag |
488 |
Q |
| |
|
|| |||||||| ||||| |||||||| ||| ||||| || |||||| ||||||| || || || | ||||||||| || |||||| |||||| |
|
|
| T |
5627431 |
tacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgccatcatatttgaaag |
5627339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 146 - 488
Target Start/End: Complemental strand, 14405168 - 14404826
Alignment:
| Q |
146 |
gagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctccaaggc |
245 |
Q |
| |
|
|||||||| | |||||||| || ||||| ||| |||||||| | ||| |||||||||||| || || ||||| |||||| ||||||||| ||| || | |
|
|
| T |
14405168 |
gagttcatcttcttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagcc |
14405069 |
T |
|
| Q |
246 |
aatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccat |
345 |
Q |
| |
|
|| |||| || ||||||||||| |||| ||||||||| || || | |||||||| ||||||||||||| ||||||||||||||||||| | | | ||| |
|
|
| T |
14405068 |
aaccatgtcccactccaatcaagttttgaagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcat |
14404969 |
T |
|
| Q |
346 |
agatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattct |
445 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||||||||| || ||||||||| ||||||||| ||||| | | |||| ||| ||||| || || ||| || |
|
|
| T |
14404968 |
agatggtattagtttgggactgtcaatatcaagatcttcccttagtaacttggaaagaagtttgttgcacgcgtaattgattccatgccttttcgatact |
14404869 |
T |
|
| Q |
446 |
tctgtgacattttctaggaagcaactaccttcatatatgaaag |
488 |
Q |
| |
|
||||| || ||||| | ||||| || ||||||||| |||||| |
|
|
| T |
14404868 |
tctgtcaccttttcaaacaagcagctgccttcatatttgaaag |
14404826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 140 - 488
Target Start/End: Complemental strand, 5571829 - 5571481
Alignment:
| Q |
140 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
239 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||||||||||||||| | ||| |||||| ||||| || || |||||||||||| ||||||||| || |
|
|
| T |
5571829 |
ttttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtc |
5571730 |
T |
|
| Q |
240 |
caaggcaatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcat |
339 |
Q |
| |
|
|||| ||| || | ||||||||||| | || |||||||| | || | |||||||| | ||||||||||| |||||| | |||||||| || | |
|
|
| T |
5571729 |
caagccaaccacctctcactccaatcaagtcttgcagaagttcagagttatgtacatcatctaatacaatgaaagatttcatatgtctgagtcttctctt |
5571630 |
T |
|
| Q |
340 |
aaccatagatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctcttt |
439 |
Q |
| |
|
| ||| | || |||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| ||||| | |||||| ||| ||||| | ||| |
|
|
| T |
5571629 |
gatcatggctgggattactttgggagtgtcaatacgaagatcttcccctagtaacttggaaagaagtttgttgcacgtgtaattgattccatgctttttt |
5571530 |
T |
|
| Q |
440 |
gattcttctgtgacattttctaggaagcaactaccttcatatatgaaag |
488 |
Q |
| |
|
|| ||||||| || |||||| ||||||| | ||||||||| |||||| |
|
|
| T |
5571529 |
gaaacttctgtcaccctttctaagaagcaattgccttcatatttgaaag |
5571481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 5649914 - 5649857
Alignment:
| Q |
277 |
aagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtctt |
334 |
Q |
| |
|
||||||| ||||||| |||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
5649914 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtctt |
5649857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 5603257 - 5603314
Alignment:
| Q |
277 |
aagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtctt |
334 |
Q |
| |
|
||||||| ||||||| |||||||| | ||||| ||||||||| ||||||||||||||| |
|
|
| T |
5603257 |
aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtctt |
5603314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 5632113 - 5632056
Alignment:
| Q |
277 |
aagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtctt |
334 |
Q |
| |
|
||||||| ||||||| |||||||| | ||||| ||||||||| ||||||||||||||| |
|
|
| T |
5632113 |
aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtctt |
5632056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 146 - 488
Target Start/End: Original strand, 13685 - 14027
Alignment:
| Q |
146 |
gagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctccaaggc |
245 |
Q |
| |
|
|||||||| | |||||||| || ||||| ||| |||||||| | ||| |||||||||||| || || ||||| |||||| ||||||||| ||| || | |
|
|
| T |
13685 |
gagttcatcttcttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagcc |
13784 |
T |
|
| Q |
246 |
aatcatgccctactccaatcaaattttctagaagttctaaagtacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccat |
345 |
Q |
| |
|
|| |||| || ||||||||||| |||| ||||||||| || || | |||||||| ||||||||||||| ||||||||||||||||||| | | | ||| |
|
|
| T |
13785 |
aaccatgtcccactccaatcaagttttgaagaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcat |
13884 |
T |
|
| Q |
346 |
agatgatattactttggtagtgtcaataccaagatctttccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattct |
445 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||||||||| || ||||||||| ||||||||| ||||| | | |||| ||| ||||| || || ||| || |
|
|
| T |
13885 |
agatggtattagtttgggactgtcaatatcaagatcttcccttagtaacttggaaagaagtttgttgcacgcgtaattgattccatgccttttcgatact |
13984 |
T |
|
| Q |
446 |
tctgtgacattttctaggaagcaactaccttcatatatgaaag |
488 |
Q |
| |
|
||||| || ||||| | ||||| || ||||||||| |||||| |
|
|
| T |
13985 |
tctgtcaccttttcaaacaagcagctgccttcatatttgaaag |
14027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 19492815 - 19492885
Alignment:
| Q |
288 |
tacgaacatcatccagtacaatgaaagctttcatgcttttgagtcttttcataaccatagatgatattact |
358 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | |||||||||| | || ||||| ||||| |||||| |
|
|
| T |
19492815 |
tacgaacatcatctagtacaatgaaagctttcattcctttgagtcttctaatgaccatggatgacattact |
19492885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 42265724 - 42265792
Alignment:
| Q |
15 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcct |
80 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
42265724 |
atgaacccagaactttcaaagccaaatggttgccttttgcataagaaactacattgtttgatatttcct |
42265792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University