View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_10 (Length: 487)
Name: NF8478_low_10
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 21 - 478
Target Start/End: Complemental strand, 15685263 - 15684803
Alignment:
| Q |
21 |
gtgtctataaaaccttcgaatctctaataatnnnnnnnctttgttaatgtactaa-tagatggtcatgatatatttttatgaagtaaatactaatgttta |
119 |
Q |
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| T |
15685263 |
gtgtctataaaaccttcgaatctctaataataaaaaaactttgttaatgtactaaatagatggtcatgatatgtttttatgaagtaaatactaatgttta |
15685164 |
T |
|
| Q |
120 |
aaaatttgaaccaaaacaaaaggattaattggttgagttatgaatcaatattctcaatgatttaaatattgttattgtaattagaattcattttcattgt |
219 |
Q |
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| T |
15685163 |
aaaatttgaaccgaaacaaaaggattaattggtcgagttatgaatcaatattctcaatgatttaaatattgctattgtaattagaatttattttcattat |
15685064 |
T |
|
| Q |
220 |
gattaaaattatgtaatgaattgaaccataactttgtggtctcattggtttatatctaaataattattaaaatatgagcaaacacaattttgtcttaaan |
319 |
Q |
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| T |
15685063 |
gattaaaattgtgtaatgaattgaaccataactttgtggtctcattggtttatatctaaataattgttaaaatatgagcaaacacaattttgtcttaaat |
15684964 |
T |
|
| Q |
320 |
nnnnnnaaatacaattatcataactttatattttatggtttattgattgaaatgaaaaac--tgttatagacataccaaaacctttgtttgaccatagtt |
417 |
Q |
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| T |
15684963 |
ttttttaaatacaattatcataactttatattttatggtttattgattgacatgaaaaactatgttatagacataccaaaacctttgtttgaccatagtt |
15684864 |
T |
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| Q |
418 |
tctgttttgtatattttaggtcggaataaatgaagagaattgtgcagcagtggagaataat |
478 |
Q |
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| T |
15684863 |
tctgttgtgtatattttaggtcggagtaaatgaagagaattgtgcagcagtggagaataat |
15684803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 77 - 380
Target Start/End: Complemental strand, 15620857 - 15620553
Alignment:
| Q |
77 |
agatggtcatgatatatttttatgaagtaaatactaatgtttaaaaatttgaaccaaaacaaaaggattaattggttgagttatgaatcaatattctcaa |
176 |
Q |
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|||| ||||| |||| |||| |||||||||||||||||||| ||||| ||| |||| | ||| ||| |||||| |||||||||||||||||||||||| |
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| T |
15620857 |
agatagtcatcatatgttttcatgaagtaaatactaatgttaaaaaacg-gaatcaaatccaaaagataaattggctgagttatgaatcaatattctcaa |
15620759 |
T |
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| Q |
177 |
tgatttaaatattgttattgtaattagaattcattttcattgtgattaaaattatgtaatgaattgaaccataactttgtggtctcattggtt-tatatc |
275 |
Q |
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| T |
15620758 |
tgattta---attgctattgtaattagatttcattttcattgtgatcaaaatagtataatgtgtggaaccataactttcgggtctcaccggttctaaatc |
15620662 |
T |
|
| Q |
276 |
taaataattattaaaatatgagcaaacacaattttgt----cttaaannnnnnnaaatacaattatcataactttatattttatggtttattgattgaaa |
371 |
Q |
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| T |
15620661 |
taaataattataaaaatatgggtaaacacaattttattgcctttaaaaaatgttaaatacaattatcataactttatagtttatgatttattgattgaca |
15620562 |
T |
|
| Q |
372 |
tgaaaaact |
380 |
Q |
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||||||||| |
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| T |
15620561 |
tgaaaaact |
15620553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 388 - 478
Target Start/End: Complemental strand, 15620061 - 15619971
Alignment:
| Q |
388 |
acataccaaaacctttgtttgaccatagtttctgttttgtatattttaggtcggaataaatgaagagaattgtgcagcagtggagaataat |
478 |
Q |
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| T |
15620061 |
acataccaaaacgtttgtttgatcatagtttctgtcatgtatattttaggtcgaaataaaggaagagaattaagcagcggtgaagaataat |
15619971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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