View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8478_low_11 (Length: 486)
Name: NF8478_low_11
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 18840130 - 18839665
Alignment:
| Q |
1 |
tatatcaaatacagggggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaaaca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
18840130 |
tatatcaaatacaggaggcatagcttttggtttggacagattggttatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaaca |
18840031 |
T |
|
| Q |
101 |
acaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagagacatttaactcttgatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18840030 |
acaactgcacagtgtgccctcacgagatcgccttccaaggtggatccccaacagctgagagatctttcaatcactacacagacatttaactcttgatagt |
18839931 |
T |
|
| Q |
201 |
tttgttgcctatacccatttttgtactttgttaaagaataatttatgtacatttaaataaatcaatgtgtatttttaggagcggtaccatgtaaacctac |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18839930 |
tttgttgcttata-ccatttttgtactttgttaaagaataatttatgtacatttaaataaatcaatgtgtatttttaggagcggtaccatgtaaacctac |
18839832 |
T |
|
| Q |
301 |
atttccatgttgtttatcacannnnnnnnnctctgttaaagaattactcaagttctgttgaagagttgtttattcttatccattgttcggcaacaatgac |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18839831 |
atttccatgttgtttatcaca-ttttttttctctgttaaagaattactcaagttctgttgaagagttgtttattcttatccattgttcggcaacaatgac |
18839733 |
T |
|
| Q |
401 |
catccaagatggtatcaacacacttcgactagcagcttcctttatggcaagcatattcatcgtcggaa |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
18839732 |
catccaagatggtatcaacacacttcgactagcagcttcctttatggcaagcatattcattgtcggaa |
18839665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 50010887 - 50010563
Alignment:
| Q |
1 |
tatatcaaatacagggggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaaaca |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
50010887 |
tatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattcaatcagggatgtcattgctttcccaaaaaca |
50010788 |
T |
|
| Q |
101 |
acaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagaga----catttaactcttga |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||| | |
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|
| T |
50010787 |
acaactgcacagtgtgccctcacgagatcaccttctgaggtggatccccaacagctgaaagatctttcaatcactacatagataggcgtttaactcttca |
50010688 |
T |
|
| Q |
197 |
tagttttgttgcctatacccatttttgtactttgttaaagaataatttatgtacatttaaataaatcaatgtgtatttttaggagcggtaccatgtaaac |
296 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
50010687 |
tagttctgttgcttatacccatttttgtactctgttaaagaataatttatggacatttaaataaatcaacatgtatttttaggagcggtaccatgtaaac |
50010588 |
T |
|
| Q |
297 |
ctacatttccatgttgtttatcaca |
321 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50010587 |
ctacatttccatgttgtttatcaca |
50010563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 18851210 - 18850887
Alignment:
| Q |
1 |
tatatcaaatacagggggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaaaca |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
18851210 |
tatatcaaatgcaggaggcatagcttttggtctggacagattggttatgatgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaaca |
18851111 |
T |
|
| Q |
101 |
acaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagaga----catttaactcttga |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | |
|
|
| T |
18851110 |
acaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactgcatagataggcatttaactcttca |
18851011 |
T |
|
| Q |
197 |
tagttttgttgcctatacccatttttgtactttgttaaagaataatttatgtacatttaaataaatcaatgtgtatttttaggagcggtaccatgtaaac |
296 |
Q |
| |
|
||||| | |||| |||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| || || |
|
|
| T |
18851010 |
tagttatattgcttatacccatttttgtactctggtaaagaataatttatacatatttaaataaatcaatgtgtatttttaggag-agtaccatctagac |
18850912 |
T |
|
| Q |
297 |
ctacatttccatgttgtttatcaca |
321 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18850911 |
ctacatttccatgttgtttatcaca |
18850887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 44108164 - 44107840
Alignment:
| Q |
1 |
tatatcaaatacagggggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaaaca |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
44108164 |
tatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattcaatcagggatgtcattgctttcccaaaaaca |
44108065 |
T |
|
| Q |
101 |
acaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagaga----catttaactcttga |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| ||| | |||||||||| | |
|
|
| T |
44108064 |
acaactgcacagtgtgccctcacgagatcaccttctgaggtggaaccccaacagctgaaagatctttcaatcactacatagataggcgtttaactcttca |
44107965 |
T |
|
| Q |
197 |
tagttttgttgcctatacccatttttgtactttgttaaagaataatttatgtacatttaaataaatcaatgtgtatttttaggagcggtaccatgtaaac |
296 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44107964 |
tagttctgttgcttatacccatttttgtactctgttaaagaataatttatggacatttaaataaatcaacatgtatttttaggagcggtaccatgtaaac |
44107865 |
T |
|
| Q |
297 |
ctacatttccatgttgtttatcaca |
321 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44107864 |
ctacatttccatgttgtttatcaca |
44107840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 51295506 - 51295163
Alignment:
| Q |
1 |
tatatcaaatacagggggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaaaca |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
51295506 |
tatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaaca |
51295407 |
T |
|
| Q |
101 |
acaactgc---------------------acagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacag |
179 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
51295406 |
tcaactgctttcccaaaaacaagaactgcacagtgtgccctcaccagatcaccttccgaggtggatccccgacagctgaaagatctttcaatcactacat |
51295307 |
T |
|
| Q |
180 |
aga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttaaagaataatttatgtacatttaaataaatcaatgtgtatttt |
275 |
Q |
| |
|
||| |||||||||||| |||||| |||||| |||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
51295306 |
agataggcatttaactcttaatagttatgttgcttatacccatttttgtactctgttaaagaatagtatacgtacatttaaataaatcaatgtgtatttt |
51295207 |
T |
|
| Q |
276 |
taggagcggtaccatgtaaacctacatttccatgttgtttatca |
319 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
51295206 |
taggagggttaccatgtaaacctacattttcatgttgttcatca |
51295163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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