View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8478_low_17 (Length: 428)
Name: NF8478_low_17
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_17 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 3056171 - 3055756
Alignment:
| Q |
1 |
aggaggtacaaacacatattgctgcaatgaatacaacattgagaatagtagagctacccaaaagcacagaaccaaccaaaacccaagtttctctattatt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056171 |
aggaggtacaaacacatattgctacaatgaatacaacattgagaatagtagagctacccaaaagcacagaaccaaccaaaacccaagtttctctattatt |
3056072 |
T |
|
| Q |
101 |
gatcttgttcacaattgttgaatttgaatttggaggaaagatagcaatggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056071 |
gatcttgttcacaattgttgaatttgaatttggaggaaagatagcaatggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagtt |
3055972 |
T |
|
| Q |
201 |
ggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055971 |
ggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctt |
3055872 |
T |
|
| Q |
301 |
tcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055871 |
tcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtt |
3055772 |
T |
|
| Q |
401 |
tttacttagttcatct |
416 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3055771 |
tttacttagttcatct |
3055756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 163 - 416
Target Start/End: Complemental strand, 3043189 - 3042936
Alignment:
| Q |
163 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
262 |
Q |
| |
|
|||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3043189 |
ttctcactttgaagaaggccttagcaccattaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
3043090 |
T |
|
| Q |
263 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
362 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
3043089 |
aatagccacagaacaatagcaatcttccatacaaactttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacatagaccaatcaacg |
3042990 |
T |
|
| Q |
363 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatct |
416 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3042989 |
tcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatct |
3042936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 163 - 416
Target Start/End: Original strand, 25125085 - 25125338
Alignment:
| Q |
163 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
262 |
Q |
| |
|
|||| ||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
25125085 |
ttctcactttgaagaaggccttagcaccattaagatttggatcatatttcccatttgagagtggtaacttctttttccaacaactatcacctaacctgaa |
25125184 |
T |
|
| Q |
263 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatg |
362 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
25125185 |
aatagccacagaacagaagcaatcttccatacactctttcatacattgttcttcagtaaaaggcttttgaagcacagaatctgacatagaccaatcaacg |
25125284 |
T |
|
| Q |
363 |
tcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatct |
416 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25125285 |
gcaatcaaagtctcaaactcatagagatcatttctgtttttacttagttcatct |
25125338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 25 - 416
Target Start/End: Complemental strand, 3035273 - 3034894
Alignment:
| Q |
25 |
caatgaatacaacattgagaatagtagagctacccaaaagcacagaaccaaccaaaacccaagtttctctattattgatcttgttcacaattgttgaatt |
124 |
Q |
| |
|
|||| |||||| ||||||||| || ||| ||||||||||||||||||||| |||||||| | ||||| |||||||| ||||||||||||| |||| ||| |
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|
| T |
3035273 |
caatcaatacagcattgagaacagcagaactacccaaaagcacagaaccagccaaaaccaacgtttccctattattagtcttgttcacaatggttggatt |
3035174 |
T |
|
| Q |
125 |
tgaatttggaggaaagatagcaatggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagt |
224 |
Q |
| |
|
| |||||| ||| ||| ||||||| | |||| |||||||| || ||||||||| ||| |||||||| |||| | |||||||||| ||| |
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|
| T |
3035173 |
ta------gaggaa------caagggatgtattatcttttctcactttcaagaaagccttagcatcattaagagttgcatcaactctcccatttgaaagt |
3035086 |
T |
|
| Q |
225 |
ggtaacttctttttccagcaactatcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaag |
324 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||||||||| |||| | ||||||||||||||||| || | ||||||| | |||| |||||| |
|
|
| T |
3035085 |
ggtaacctcttcttccaacaactatcaccgtacctgaaaatagccacataacacatgcaatcttccatacaagattccttacattgtttttcattaaaag |
3034986 |
T |
|
| Q |
325 |
gcttttgaagcacagaatctgacataggccaatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatct |
416 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3034985 |
gcttttgaagcacaaaatctgagtaaggccaatcaatgtcagtcatagtctcaaactcatagagatcatttctgtttttacttggttcatct |
3034894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 149 - 416
Target Start/End: Original strand, 3063268 - 3063535
Alignment:
| Q |
149 |
ggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaacta |
248 |
Q |
| |
|
||||| ||||| | |||| |||||||| || ||||||||||||| |||||||| |||| | |||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
3063268 |
ggaggcattatcttttctcactttcaagaaagccttagcaccattaagagttgcatcaactctcccatttgaaagtggtaacttcttcttccaacaacta |
3063367 |
T |
|
| Q |
249 |
tcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctgaca |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||| || ||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
3063368 |
tcacctaacctgaaaatagccacagaacacaagcaatcatccatacaagatttcctacactgttcttcagtaaaaggcctttgaagcacataatctgata |
3063467 |
T |
|
| Q |
349 |
taggccaatcaatgtcagtcaaagtctcaaactcatagagatcatttctgtttttacttagttcatct |
416 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
3063468 |
gaggccaatcagtgtcaatcaaaatctcaaactcatagagatcatttctctttttacttggatcatct |
3063535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 215 - 391
Target Start/End: Original strand, 3071012 - 3071188
Alignment:
| Q |
215 |
atttgagagtggtaacttctttttccagcaactatcacctaacctgaaaatagccacagaacaaaagcaatcttccatacaagctttcatacattgatct |
314 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||| ||||||| || |
|
|
| T |
3071012 |
atttgagagtggtaacttcttcttccaacaactatcacctaacctccaaatagccacagaacacatgcaatcttccatactagctttcctacattgttca |
3071111 |
T |
|
| Q |
315 |
tcagtaaaaggcttttgaagcacagaatctgacataggccaatcaatgtcagtcaaagtctcaaactcatagagatc |
391 |
Q |
| |
|
|| |||||| || || ||||||| | |||||| | |||||||||| ||||| ||||| || ||||||||| ||||| |
|
|
| T |
3071112 |
tctgtaaaacgcgttagaagcacggcatctgatagaggccaatcagtgtcattcaaaacctgaaactcatatagatc |
3071188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 3040977 - 3040794
Alignment:
| Q |
163 |
ttctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaacttctttttccagcaactatcacctaacctgaa |
262 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| | |||||| ||| |||||| |
|
|
| T |
3040977 |
ttctcacttttaagaaggccttagcaccatcaagtgttgcatcaactctcccatttgagagtggtaacttctttttaaaacaactactaccgtccctgaa |
3040878 |
T |
|
| Q |
263 |
aatagccacagaacaaaagcaatcttccatacaagctttcatacattgatcttcagtaaaaggcttttgaagcacagaatctga |
346 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||| ||| | |||||||||||||||| | ||||||| | |||||| |
|
|
| T |
3040877 |
aatagccacagaacacaaacaatcttccatgcaagctttcatgcatcgttcttcagtaaaaggctctagaagcacggcatctga |
3040794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 3070761 - 3070849
Alignment:
| Q |
12 |
acacatattgctgcaatgaatacaacattgagaatagtagagctacccaaaagcacagaaccaaccaaaacccaagtttctctattatt |
100 |
Q |
| |
|
||||| |||| | |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
3070761 |
acacagattgttacaatcaatacaacattgagaatagcagagctaccaaaaagcacagaaccaaccaaaaccaatgtttgtctattatt |
3070849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 3037293 - 3037375
Alignment:
| Q |
147 |
atggaggtattatgtattctaactttcaaaaaggccttagcaccatcaagagttggatcatatttcccatttgagagtggtaa |
229 |
Q |
| |
|
||||||||||||| | |||| | |||||| || ||||||||||||| |||||||| |||| | ||||||||||||||||||| |
|
|
| T |
3037293 |
atggaggtattatcttttctcattttcaagaaagccttagcaccattaagagttgcatcaactctcccatttgagagtggtaa |
3037375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 25125016 - 25125062
Alignment:
| Q |
52 |
agctacccaaaagcacagaaccaaccaaaacccaagtttctctatta |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
25125016 |
agctacccaaaagcacagaaccaaacaaaaccaaagtttgtctatta |
25125062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 3044071 - 3044023
Alignment:
| Q |
52 |
agctacccaaaagcacagaaccaaccaaaacccaagtttctctattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||| ||||||||| |
|
|
| T |
3044071 |
agctacccaaaagcacagaaccaaacaagaccatagtttgtctattatt |
3044023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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