View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_18 (Length: 417)
Name: NF8478_low_18
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 43456614 - 43456346
Alignment:
| Q |
16 |
atgaacatggaattgaattactaaaagaaaaatctagatagaaatgtttcttgattaattaagtattaagtatgggaagcagtcaagtaatacttgaaaa |
115 |
Q |
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| T |
43456614 |
atgaacatggaattgaattactaaaagaaaaatctagatagaaatgtttcttgattaattaagtattaagtatgggaagcagtcaagtaatacttgaaaa |
43456515 |
T |
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| Q |
116 |
gcttcttgtacggtaccatctccgatccataaattctaatgtagcttaaatttagatgtcaccaacaagtcgaaactcaaaggcagttgacaagataatg |
215 |
Q |
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| T |
43456514 |
gcttcttgtacggtaccatctccaatccataaattctaatgtagcttaaatttagatgtcac---caagtcgaaactcaaaggcagttgacaagataatg |
43456418 |
T |
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| Q |
216 |
tttcctatagtaatttacataacatgtcaaaacccatgaaacaaacctaccaacttttttacacaataatag |
287 |
Q |
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| T |
43456417 |
tttcctatagtaatttacataacatgtcaaaacccatgaaacaaacctaccaacttttttacacaataatag |
43456346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 43456350 - 43456265
Alignment:
| Q |
318 |
aatagtcaagattgttaattaattttctaaaggaagaaaaattcaatgttaaacctagagctacactttacatcactattactgat |
403 |
Q |
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| T |
43456350 |
aatagtcaagattgttaattaattttctaaaggaagaaaaattcaatgttaaacctagagttacactttacatcactattactgat |
43456265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 143 - 403
Target Start/End: Complemental strand, 43464741 - 43464487
Alignment:
| Q |
143 |
cataaattctaatgtagcttaaatttagatgtcaccaacaagtcgaaactc-aaaggcagttgacaagataatgtttcctatagtaatttacataacatg |
241 |
Q |
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| T |
43464741 |
catatattctaatgtagcttaaatttagatgtcac---caagtcgaaattcaaaaggcaattgccaagatgatgtttcc--tagtagtttacataacaag |
43464647 |
T |
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| Q |
242 |
tcaaaacccatgaaacaaacctaccaacttttttacacaataatagctaatgactaagcnnnnnnnnaagagaaacaatagtcaagattgttaattaatt |
341 |
Q |
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| T |
43464646 |
ggaaaatctatgaagtagacatatcaac-tttttacataataatagctaatgactaagctttttttaaagagaaacaaaattcaagattg-tatataatt |
43464549 |
T |
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| Q |
342 |
ttctaaaggaagaaaaattcaatgttaaacctagagctacactttacatcactattactgat |
403 |
Q |
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| T |
43464548 |
ttccaaaggaagaaaaattcaatgttaaagttagcgctacactttaccccactactactgat |
43464487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 43464858 - 43464772
Alignment:
| Q |
61 |
gtttcttgattaattaa-gtattaagtatgggaagcagtcaagtaatacttgaaaagcttcttgtacggtaccatctccgatccata |
146 |
Q |
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| T |
43464858 |
gtttctcgattaattaaagtattaagcatgtgaagaagtcaagtaacatttgaaaagcttcgtgtacggtaccacctcgaatccata |
43464772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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