View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_20 (Length: 388)
Name: NF8478_low_20
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 51739037 - 51739385
Alignment:
| Q |
24 |
ttgttaaaacgtaaaatttcatatcagattcctttctttgtctaatttattgattgaagttttgacaaacacattaaatgcacacaatggatgccacaca |
123 |
Q |
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| T |
51739037 |
ttgttaaaacgtaaaatttcatatcagattcctttctttgtctaatttattgattga-gttttgacaaaaacattaaatccacacaatggatgccaccca |
51739135 |
T |
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| Q |
124 |
caaaatgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtcctt |
223 |
Q |
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| T |
51739136 |
caaaatgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtcctt |
51739235 |
T |
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| Q |
224 |
aggaccctaggtcaacctggacccgttgcacaaattctggtaattgattagttattgtttcat---tctacattattta-tttacattgaagttttcaat |
319 |
Q |
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| T |
51739236 |
aggaccctaggtcaacctggacccgttgcacaaattctggtaattgattagttattgtttcattaatctacattatttacattgaattgaagttttcaat |
51739335 |
T |
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| Q |
320 |
tattaatgcattgattgcattgttgaattacaggcagggttggtattagg |
369 |
Q |
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| T |
51739336 |
tattaatgcattgattgcattgttgaattacaggcagggttggtattagg |
51739385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 267
Target Start/End: Original strand, 10199570 - 10199709
Alignment:
| Q |
128 |
atgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtccttagga |
227 |
Q |
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| T |
10199570 |
atgttttgtaacgatgatcttgttaaccctctaagttctatgggtatgcaagtgtcatgcattcttgttgtgtcacacttcttcaacgttgttcttagga |
10199669 |
T |
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| Q |
228 |
ccctaggtcaacctggacccgttgcacaaattctggtaat |
267 |
Q |
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| T |
10199670 |
ctatgggccaacctggacccattgcacaaattctggtaat |
10199709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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