View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_22 (Length: 350)
Name: NF8478_low_22
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 39954740 - 39954417
Alignment:
| Q |
18 |
gtaatgagtttgagaaaacgttaagttaaacgcatttctggttttgttctcgataattagtgcattttttgcgtgcaatt-------tcttgtaagttcc |
110 |
Q |
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| T |
39954740 |
gtaatgagtttgagaaaatgttaagttaaacgcatttctggttttgttctcgataattagtgcattttttgcgtgcaattatcgagatcttgtaagttcc |
39954641 |
T |
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| Q |
111 |
ataatatataaaccaaagacaatatcgaaatcttggaaattcactaaaggtaagtgtcctcttgtttcatattcaacttgttcttgaatagttgttata- |
209 |
Q |
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| T |
39954640 |
ataatatataaaccaaagacaatatcgaaatcttggaaattcactgaaggtaagtgtcctcttgtttcatattcaacttggtcttgaatagttgttataa |
39954541 |
T |
|
| Q |
210 |
------tatgcttcatatgtgttatattttgaatctacttaaaaaattatcgtattcaattattgtatgtataacttatacgaagcctgtgattttccct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
39954540 |
cttatatatgcttcatatgtgttatattttgaatctacttaaaaaattatcgtattcaattattgtatatataacttatacgaagcctatgattttccct |
39954441 |
T |
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| Q |
304 |
ttgtataacttgaatttagagggt |
327 |
Q |
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|||||||||||||||||||||||| |
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| T |
39954440 |
ttgtataacttgaatttagagggt |
39954417 |
T |
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