View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_30 (Length: 248)
Name: NF8478_low_30
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_30 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 4202961 - 4203149
Alignment:
| Q |
47 |
ggcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtc |
146 |
Q |
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| T |
4202961 |
ggcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtc |
4203060 |
T |
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| Q |
147 |
ctacatcttctaaacacacaatctttcttagccctattaccacaatcttgacaaactctatactcagaaccatacacaccatattcttc |
235 |
Q |
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| T |
4203061 |
ctacatcttctaaacacacaatctttcttagccctattaccacaatcttgacacactctatactcagaaccatacacaccattttcttc |
4203149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 16960 - 17082
Alignment:
| Q |
90 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
189 |
Q |
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| T |
16960 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
17059 |
T |
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| Q |
190 |
aatcttgacaaactctatactca |
212 |
Q |
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| T |
17060 |
aatcttgacaaaccctaaactca |
17082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 14512853 - 14512731
Alignment:
| Q |
90 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
189 |
Q |
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| T |
14512853 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
14512754 |
T |
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| Q |
190 |
aatcttgacaaactctatactca |
212 |
Q |
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| T |
14512753 |
aatcttgacaaaccctaaactca |
14512731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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