View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8478_low_31 (Length: 248)

Name: NF8478_low_31
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8478_low_31
NF8478_low_31
[»] chr4 (29 HSPs)
chr4 (34-100)||(10431443-10431509)
chr4 (34-99)||(55255080-55255145)
chr4 (34-99)||(47127981-47128046)
chr4 (34-96)||(17679220-17679282)
chr4 (34-100)||(37514557-37514623)
chr4 (34-99)||(5128984-5129049)
chr4 (34-99)||(45560705-45560770)
chr4 (34-96)||(48208453-48208515)
chr4 (34-85)||(1105445-1105496)
chr4 (34-97)||(13459786-13459849)
chr4 (45-99)||(32915297-32915351)
chr4 (34-83)||(38209842-38209891)
chr4 (34-90)||(27596640-27596696)
chr4 (99-157)||(1644067-1644125)
chr4 (38-80)||(9579474-9579516)
chr4 (38-80)||(9585169-9585211)
chr4 (34-83)||(34769534-34769583)
chr4 (52-99)||(10978144-10978191)
chr4 (40-90)||(54779450-54779500)
chr4 (55-96)||(23510922-23510963)
chr4 (34-90)||(24969251-24969307)
chr4 (34-86)||(35780557-35780609)
chr4 (34-93)||(54083479-54083538)
chr4 (47-89)||(32128402-32128444)
chr4 (34-87)||(16844839-16844892)
chr4 (34-87)||(37777460-37777513)
chr4 (99-158)||(9278161-9278218)
chr4 (47-88)||(2790988-2791029)
chr4 (34-83)||(40089340-40089389)
[»] chr8 (12 HSPs)
chr8 (34-99)||(2952473-2952538)
chr8 (34-99)||(5860996-5861061)
chr8 (34-99)||(20003877-20003942)
chr8 (34-99)||(30883110-30883175)
chr8 (34-100)||(3048774-3048840)
chr8 (34-100)||(37430302-37430368)
chr8 (34-97)||(41878167-41878230)
chr8 (34-89)||(45472201-45472256)
chr8 (34-93)||(42600590-42600649)
chr8 (47-93)||(10917200-10917246)
chr8 (51-101)||(45294597-45294647)
chr8 (34-90)||(23606856-23606912)
[»] chr5 (15 HSPs)
chr5 (34-99)||(15480230-15480295)
chr5 (34-99)||(19523093-19523158)
chr5 (34-100)||(31881591-31881657)
chr5 (34-96)||(36188020-36188082)
chr5 (34-95)||(34756615-34756676)
chr5 (34-99)||(16592846-16592911)
chr5 (34-99)||(30853266-30853331)
chr5 (36-99)||(22987470-22987534)
chr5 (34-100)||(2274797-2274863)
chr5 (34-103)||(31194768-31194837)
chr5 (34-99)||(16199027-16199092)
chr5 (34-93)||(27923891-27923950)
chr5 (51-99)||(8433593-8433641)
chr5 (34-87)||(16799557-16799610)
chr5 (34-87)||(38869594-38869647)
[»] chr3 (27 HSPs)
chr3 (34-99)||(36716276-36716341)
chr3 (34-99)||(38681348-38681413)
chr3 (34-99)||(27078819-27078884)
chr3 (34-99)||(27084616-27084681)
chr3 (34-99)||(50258735-50258800)
chr3 (34-98)||(3954853-3954917)
chr3 (34-101)||(42098696-42098763)
chr3 (34-100)||(54619454-54619520)
chr3 (34-99)||(13795187-13795252)
chr3 (34-100)||(47467581-47467646)
chr3 (34-100)||(53149458-53149524)
chr3 (34-99)||(21582668-21582733)
chr3 (52-101)||(29620618-29620667)
chr3 (34-83)||(36605862-36605911)
chr3 (38-90)||(1148359-1148411)
chr3 (36-99)||(18372033-18372095)
chr3 (36-90)||(48156951-48157005)
chr3 (34-90)||(9878920-9878976)
chr3 (34-90)||(34290875-34290931)
chr3 (34-90)||(53507118-53507174)
chr3 (34-89)||(43207475-43207530)
chr3 (34-93)||(50939469-50939528)
chr3 (103-145)||(5746975-5747017)
chr3 (103-145)||(5783934-5783976)
chr3 (34-88)||(44708293-44708347)
chr3 (34-89)||(8074088-8074143)
chr3 (50-103)||(33426346-33426399)
[»] chr2 (21 HSPs)
chr2 (34-99)||(3155003-3155068)
chr2 (34-97)||(6964794-6964857)
chr2 (34-100)||(12337690-12337756)
chr2 (34-99)||(4505679-4505744)
chr2 (34-99)||(7162677-7162742)
chr2 (34-99)||(34693147-34693212)
chr2 (34-99)||(34715559-34715624)
chr2 (34-99)||(3952899-3952964)
chr2 (38-98)||(40635963-40636023)
chr2 (36-99)||(3399509-3399572)
chr2 (100-158)||(37178772-37178830)
chr2 (34-95)||(8907330-8907391)
chr2 (34-99)||(41213929-41213994)
chr2 (99-150)||(20523216-20523267)
chr2 (34-93)||(27506976-27507035)
chr2 (52-97)||(5952949-5952993)
chr2 (34-90)||(26715940-26715996)
chr2 (34-89)||(9045842-9045897)
chr2 (34-93)||(24410242-24410301)
chr2 (103-145)||(27474302-27474344)
chr2 (34-99)||(10762800-10762865)
[»] chr1 (25 HSPs)
chr1 (34-99)||(14146205-14146270)
chr1 (34-99)||(44655539-44655604)
chr1 (34-99)||(27906949-27907014)
chr1 (38-99)||(41697284-41697345)
chr1 (34-99)||(3406323-3406388)
chr1 (34-99)||(3440432-3440497)
chr1 (34-95)||(6888473-6888534)
chr1 (34-104)||(16139955-16140025)
chr1 (34-91)||(6771704-6771761)
chr1 (34-100)||(10912095-10912161)
chr1 (53-99)||(50880568-50880614)
chr1 (34-100)||(23181710-23181776)
chr1 (34-93)||(13913717-13913776)
chr1 (34-93)||(40502025-40502084)
chr1 (41-87)||(5027982-5028028)
chr1 (99-148)||(23415318-23415367)
chr1 (34-90)||(1367112-1367168)
chr1 (47-90)||(44895476-44895519)
chr1 (103-148)||(23700666-23700711)
chr1 (34-90)||(9173256-9173312)
chr1 (52-102)||(5315791-5315841)
chr1 (34-87)||(27559459-27559512)
chr1 (56-99)||(34246890-34246930)
chr1 (34-87)||(51607674-51607727)
chr1 (34-90)||(17168778-17168834)
[»] scaffold0070 (1 HSPs)
scaffold0070 (34-100)||(1010-1076)
[»] chr6 (22 HSPs)
chr6 (34-100)||(21479283-21479349)
chr6 (34-99)||(13727650-13727715)
chr6 (34-97)||(23070890-23070953)
chr6 (42-101)||(27314773-27314832)
chr6 (38-96)||(21280336-21280394)
chr6 (34-99)||(12083641-12083706)
chr6 (34-99)||(19741224-19741289)
chr6 (34-99)||(24711143-24711208)
chr6 (34-99)||(33773900-33773964)
chr6 (42-101)||(27579084-27579143)
chr6 (34-101)||(30832668-30832734)
chr6 (34-99)||(1156018-1156083)
chr6 (103-158)||(22845356-22845411)
chr6 (99-152)||(26621369-26621422)
chr6 (99-152)||(26727348-26727401)
chr6 (34-90)||(17353768-17353824)
chr6 (34-90)||(19986975-19987031)
chr6 (34-90)||(27788923-27788979)
chr6 (47-93)||(235473-235519)
chr6 (34-90)||(20711953-20712009)
chr6 (99-144)||(8095377-8095422)
chr6 (34-90)||(11081684-11081740)
[»] chr7 (14 HSPs)
chr7 (34-99)||(12596430-12596495)
chr7 (34-99)||(18777019-18777084)
chr7 (34-98)||(28749582-28749646)
chr7 (34-101)||(10955376-10955443)
chr7 (34-104)||(29076925-29076997)
chr7 (34-90)||(47985203-47985259)
chr7 (103-158)||(14236862-14236917)
chr7 (47-90)||(19691906-19691949)
chr7 (34-88)||(48984078-48984132)
chr7 (49-90)||(24525934-24525975)
chr7 (34-93)||(20091515-20091573)
chr7 (34-87)||(23551306-23551359)
chr7 (56-99)||(40357589-40357629)
chr7 (34-90)||(25010262-25010318)
[»] scaffold0001 (1 HSPs)
scaffold0001 (54-101)||(181433-181480)
[»] scaffold0102 (2 HSPs)
scaffold0102 (99-148)||(2306-2355)
scaffold0102 (99-148)||(6659-6708)
[»] scaffold0039 (1 HSPs)
scaffold0039 (34-90)||(106388-106444)
[»] scaffold0027 (1 HSPs)
scaffold0027 (51-99)||(4149-4197)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 10431443 - 10431509
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10431443 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 10431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 55255145 - 55255080
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 55255080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 47128046 - 47127981
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47128046 tgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctcagggacgcccctg 47127981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 17679282 - 17679220
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 96  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17679282 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcagggacgccc 17679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 37514623 - 37514557
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37514623 tgaggcccatccttggaggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 37514557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 5128984 - 5129049
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5128984 tgaggcctatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 5129049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 45560705 - 45560770
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45560705 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 45560770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 48208515 - 48208453
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 96  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  48208515 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggatgccc 48208453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 1105496 - 1105445
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1105496 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 1105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 13459849 - 13459786
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 97  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||    
T  13459849 tgaggcccatccttaagggaggctcagctcgtttgagctgtttgcaccccctcaggaacgcccc 13459786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 32915351 - 32915297
Alignment:
Q  45 cttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32915351 cttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 32915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 38209842 - 38209891
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38209891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 27596640 - 27596696
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  27596640 tgaggcccatcctcgggggaggcccagctcgtttgagctgttcgcaccccctcaggg 27596696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 1644067 - 1644125
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattagcatatgaag 157  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||    
T  1644067 gcttgggatggtagatatctaccaacctccagcttgcgagggggtatcagcacatgaag 1644125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 9579474 - 9579516
Alignment:
Q  38 gcccatccttgagggaggcccagctcgtttgagctgtttgcac 80  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9579474 gcccatccttgagggaggcccagctcgtttgagctgtttgcac 9579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 9585169 - 9585211
Alignment:
Q  38 gcccatccttgagggaggcccagctcgtttgagctgtttgcac 80  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9585169 gcccatccttgagggaggcccagctcgtttgagctgtttgcac 9585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 34769534 - 34769583
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 83  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34769534 tgaggcccatccttgagggaggcccaactcgtttgagctatttgcacccc 34769583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 10978191 - 10978144
Alignment:
Q  52 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10978191 gaggcgcagctcgtttgagctgtttgcaccctctcagggacgcccctg 10978144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 54779500 - 54779450
Alignment:
Q  40 ccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  54779500 ccatccttgggggaggcccagctcggttgagctgtttgcactccctcaggg 54779450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 23510922 - 23510963
Alignment:
Q  55 gcccagctcgtttgagctgtttgcaccccctcagggacgccc 96  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  23510922 gcccagttcgtttgagctgtttgcaccccctcagggacgccc 23510963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 24969307 - 24969251
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  24969307 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 24969251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 35780557 - 35780609
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctc 86  Q
    ||||||| |||| || ||||||||||||||| |||||||||||||||||||||    
T  35780557 tgaggcctatccgtgggggaggcccagctcggttgagctgtttgcaccccctc 35780609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 54083479 - 54083538
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   ||||||| |||||||||  ||||||||||||||||||||||||||||    
T  54083479 tgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacg 54083538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 32128444 - 32128402
Alignment:
Q  47 tgagggaggcccagctcgtttgagctgtttgcaccccctcagg 89  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  32128444 tgagggaggcccagctctgttgagctgtttgcaccccctcagg 32128402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 16844892 - 16844839
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||    
T  16844892 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 16844839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 37777460 - 37777513
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||  |||||||||| |||||||  ||||||||||||||||||||||    
T  37777460 tgaggcccatgattgagggaggtccagctctgttgagctgtttgcaccccctca 37777513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 9278218 - 9278161
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattagcatatgaaga 158  Q
    |||||||||||||| ||||||||||||||||| ||  | |||| ||||||||||||||||    
T  9278218 gcttgggatggtaggtatctaccaacctccagctt--gtggggttattagcatatgaaga 9278161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 2790988 - 2791029
Alignment:
Q  47 tgagggaggcccagctcgtttgagctgtttgcaccccctcag 88  Q
    |||||||| ||||||||  |||||||||||||||||||||||    
T  2790988 tgagggagacccagctctgttgagctgtttgcaccccctcag 2791029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 40089389 - 40089340
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 83  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  40089389 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 40089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 2952473 - 2952538
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 2952538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 5860996 - 5861061
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 5861061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 20003877 - 20003942
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20003877 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 20003942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 30883175 - 30883110
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccactcagggacgcccctg 30883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 3048774 - 3048840
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagaaacgcccctgc 3048840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 37430302 - 37430368
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  37430302 tgaggcccatccttaaggaaggcccaactcgtttgagctgtttgcaccccctcaaggacgcccctgc 37430368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 41878230 - 41878167
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 97  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  41878230 tgaggctcatccttgagggaggctcaactcgtttgagctgtttgcaccccctcaaggacgcccc 41878167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 45472256 - 45472201
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagg 89  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  45472256 tgaggcccatccttgggggtggcccagctcggttgagctgtttgcaccccctcagg 45472201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 42600649 - 42600590
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||||||    
T  42600649 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 42600590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 10917246 - 10917200
Alignment:
Q  47 tgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||    
T  10917246 tgagggaggcccagctctgttgagctgtttgcaccccctcaaggacg 10917200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 45294597 - 45294647
Alignment:
Q  51 ggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    ||||||||||||| || |||||||||||||||||||| ||||| |||||||    
T  45294597 ggaggcccagctcattagagctgtttgcaccccctcaaggacggccctgct 45294647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 23606856 - 23606912
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   ||||||||||||| |||  |||||||||||||||||||||||||    
T  23606856 tgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcaggg 23606912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 15480230 - 15480295
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15480230 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 15480295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 19523158 - 19523093
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523158 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 19523093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 31881591 - 31881657
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31881591 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 31881657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 36188020 - 36188082
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 96  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36188020 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgccc 36188082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 34756615 - 34756676
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcc 34756676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 16592846 - 16592911
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16592846 tgaggcccatccttaaaggaggtccagctcgtttgagctgtttgcaccccctcagggacgcccctg 16592911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 30853331 - 30853266
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30853331 tgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcaccccctaagggacgcccctg 30853266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 22987470 - 22987534
Alignment:
Q  36 aggcccatccttgagggaggcccagctcgtttgagctgtttgca-ccccctcagggacgcccctg 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22987470 aggcccatctttgagggaggcccagctcgtttgagctgtttgcacccccctcagggacgcccctg 22987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 2274863 - 2274797
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  2274863 tgaggtccatccttgagggaggcccaactcatttgagctgtttgcaccccctcaggaacgcccctgc 2274797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 31194768 - 31194837
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgcttg 103  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||| |||| || |||||||||||||    
T  31194768 tgaggcccatccttgagagaggcccagttcgtttgagttgtttgcacctcctctggaacgcccctgcttg 31194837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 16199027 - 16199092
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  16199027 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgcgcctg 16199092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 27923950 - 27923891
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  27923950 tgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacg 27923891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 8433593 - 8433641
Alignment:
Q  51 ggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||| || |||||||||||||||||||| ||||| |||||    
T  8433593 ggaggcccagctcattagagctgtttgcaccccctcaaggacggccctg 8433641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 16799557 - 16799610
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||   ||||||||||| |||||  ||||||||||||||||||||||    
T  16799557 tgaggcccatgactgagggaggcctagctctattgagctgtttgcaccccctca 16799610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 38869594 - 38869647
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||   ||||||||||||||||   ||||||||||||||||||||||    
T  38869594 tgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctca 38869647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 36716276 - 36716341
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 36716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 38681348 - 38681413
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 38681413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 27078819 - 27078884
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 27078884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 27084616 - 27084681
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 27084681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 50258735 - 50258800
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50258735 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctcagggacgcccctg 50258800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 3954853 - 3954917
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccct 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954853 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccct 3954917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 42098763 - 42098696
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42098763 tgaggcccatccttgtgggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctgct 42098696  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 54619454 - 54619520
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggatacccctgc 54619520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 13795252 - 13795187
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13795252 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacgccctcaaggacgcccctg 13795187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 47467646 - 47467581
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  47467646 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgca-cccctcagggacgcccctgc 47467581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 53149458 - 53149524
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53149458 tgaggcccatccttggtggaggcccagctcgtttgagctgtttgcaccccctgagggacgcccctgc 53149524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 21582733 - 21582668
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  21582733 tgaggcccatccttaagggatgcccagctcgtttgagctgtttgcaccccctcagagacgcccctg 21582668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 29620618 - 29620667
Alignment:
Q  52 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29620618 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 29620667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 36605911 - 36605862
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36605862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 1148359 - 1148411
Alignment:
Q  38 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  1148359 gcccatccttgggggaggcccagctcgtttgagctgttcgcaccccctcaggg 1148411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 18372095 - 18372033
Alignment:
Q  36 aggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||    
T  18372095 aggcccatccttgagggagccccagctcgtttgaactgtttgca-cccctcagagacgcccctg 18372033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 48157005 - 48156951
Alignment:
Q  36 aggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||  ||||||||||||||||||  |||||||||||||||||||||||||    
T  48157005 aggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcaggg 48156951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 9878920 - 9878976
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||||||||    
T  9878920 tgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcaggg 9878976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 34290875 - 34290931
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    |||||||||| | ||||||||||||| |||  |||||||||||||||||||||||||    
T  34290875 tgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcaggg 34290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 53507118 - 53507174
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  53507118 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 53507174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 43207475 - 43207530
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagg 89  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||    
T  43207475 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagg 43207530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 50939469 - 50939528
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||| |||||||||||    
T  50939469 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacg 50939528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 5747017 - 5746975
Alignment:
Q  103 gggatggtagatatctaccaacctccagtttgagagggggtat 145  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  5747017 gggatggtagatatctaccaaccaccagtttgcgagggggtat 5746975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 5783976 - 5783934
Alignment:
Q  103 gggatggtagatatctaccaacctccagtttgagagggggtat 145  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  5783976 gggatggtagatatctaccaaccaccagtttgcgagggggtat 5783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 44708347 - 44708293
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcag 88  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||    
T  44708347 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcag 44708293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 8074088 - 8074143
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagg 89  Q
    |||||||||||||||  |||||||||||||| ||||| ||||||||  ||||||||    
T  8074088 tgaggcccatccttggaggaggcccagctcgattgagttgtttgcaatccctcagg 8074143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 33426399 - 33426346
Alignment:
Q  50 gggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgcttg 103  Q
    ||||||||||||||  |||||||||||||||| || || ||||| |||||||||    
T  33426399 gggaggcccagctccattgagctgtttgcacctccccatggacggccctgcttg 33426346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 3155068 - 3155003
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 3155003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 6964857 - 6964794
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 6964794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 12337690 - 12337756
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12337690 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcagggacgcccctgc 12337756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 4505744 - 4505679
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 4505679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 7162742 - 7162677
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7162742 tgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 7162677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 34693212 - 34693147
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34693212 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 34693147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 34715624 - 34715559
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34715624 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 34715559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 3952964 - 3952899
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  3952964 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagagacacccctg 3952899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 40636023 - 40635963
Alignment:
Q  38 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccct 98  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  40636023 gcccatccttgagggaggcccaactcgtttgagctgtttgcacccccttagggacgcccct 40635963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 3399572 - 3399509
Alignment:
Q  36 aggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  3399572 aggcccatccttgagggaggtccaactcgtttgagctgtttgcaccccctcaaggacgcccctg 3399509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 37178772 - 37178830
Alignment:
Q  100 cttgggatggtagatatctaccaacctccagtttgagagggggtattagcatatgaaga 158  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  37178772 cttgggatggtagatatctaccaaccaccagtttgagagggggtattagcatataaaga 37178830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 8907330 - 8907391
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 95  Q
    |||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8907330 tgagacccatctttgagggaggtccagcttgtttgagctgtttgcaccccctcagggacgcc 8907391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 41213929 - 41213994
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| |||||||    
T  41213929 tgaggcccatcctcgagggagacccagctcgtttaagctgtttgcaccccctcaaggatgcccctg 41213994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 20523216 - 20523267
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattagca 150  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  20523216 gcttgggatggtagatatctaccaacctccagcttgcgagggggtattagca 20523267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 27506976 - 27507035
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||||||    
T  27506976 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 27507035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 5952949 - 5952993
Alignment:
Q  52 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 97  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  5952949 gaggcccagctcgtttgagctgtttgca-cccctcagggacgcccc 5952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 26715996 - 26715940
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  26715996 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 26715940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 9045897 - 9045842
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagg 89  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||    
T  9045897 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagg 9045842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 24410301 - 24410242
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||| |||||||    
T  24410301 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacg 24410242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 27474302 - 27474344
Alignment:
Q  103 gggatggtagatatctaccaacctccagtttgagagggggtat 145  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  27474302 gggatggtagatatctaccaaccaccagtttgcgagggggtat 27474344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 10762800 - 10762865
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||  |||||||| |||||||||  |||||||||||||| |||||||||| || |||||    
T  10762800 tgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctcagggccggccctg 10762865  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 14146270 - 14146205
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14146270 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 14146205  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 44655604 - 44655539
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 44655539  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 27906949 - 27907014
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 27907014  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 41697284 - 41697345
Alignment:
Q  38 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41697284 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 41697345  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 3406388 - 3406323
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3406388 tgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 3406323  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 3440432 - 3440497
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3440432 tgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 3440497  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 6888534 - 6888473
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 95  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6888534 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcc 6888473  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 16140025 - 16139955
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgcttgg 104  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  16140025 tgagacccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaaggacgcccctgtttgg 16139955  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 6771761 - 6771704
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggga 91  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6771761 tgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccctcaggga 6771704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 10912095 - 10912161
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  10912095 tgaggcccatccttggaggaggcccagctcgtttgagctgttcgcaccccctcagggccggccctgc 10912161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 50880614 - 50880568
Alignment:
Q  53 aggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50880614 aggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 50880568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 23181776 - 23181710
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  23181776 tgaggcccatcattgggggtggcccagctcggttgagctgtttgcaccccctcagggccggccctgc 23181710  T

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Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 13913717 - 13913776
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||||||    
T  13913717 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 13913776  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 40502025 - 40502084
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||||||    
T  40502025 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 40502084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 5027982 - 5028028
Alignment:
Q  41 catccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5027982 catccttgggggaggcccagctcggttgagctgtttgcaccccctca 5028028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 23415367 - 23415318
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattag 148  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  23415367 gcttgggatggtagatatctaccaacctccagcttgtgggggggtattag 23415318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 1367112 - 1367168
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  1367112 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 1367168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 44895519 - 44895476
Alignment:
Q  47 tgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    |||||||||||||||||  |||||||||||||||||||||||||    
T  44895519 tgagggaggcccagctctgttgagctgtttgcaccccctcaggg 44895476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 23700711 - 23700666
Alignment:
Q  103 gggatggtagatatctaccaacctccagtttgagagggggtattag 148  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||    
T  23700711 gggatggcagatatctaccaacctccagtttgcgagggcgtattag 23700666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 9173256 - 9173312
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   ||||||||||||| |||  |||||||||||||||||||||||||    
T  9173256 tgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcaggg 9173312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 5315841 - 5315791
Alignment:
Q  52 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgctt 102  Q
    |||||||| |||||||||| ||||| || |||||||| |||||||||||||    
T  5315841 gaggcccaactcgtttgaggtgtttacatcccctcagagacgcccctgctt 5315791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 27559512 - 27559459
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||   ||||||||| |||||||  ||||||||||||||||||||||    
T  27559512 tgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctca 27559459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 34246930 - 34246890
Alignment:
Q  56 cccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||   |||||||||||||||||    
T  34246930 cccagctcgtttgagctgtttgca---cctcagggacgcccctg 34246890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 51607674 - 51607727
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||  |||||| |||||||||||  |||||||||||||||| |||||    
T  51607674 tgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctca 51607727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 17168834 - 17168778
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   ||||||||||| |||||  |||||||||||||| ||||||||||    
T  17168834 tgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctcaggg 17168778  T

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Target: scaffold0070 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 1076 - 1010
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1076 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 1010  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 21479349 - 21479283
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21479349 tgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctcagggacgcccctgc 21479283  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 13727650 - 13727715
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 13727715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 23070890 - 23070953
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23070890 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccc 23070953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 27314773 - 27314832
Alignment:
Q  42 atccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314773 atccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 27314832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 21280394 - 21280336
Alignment:
Q  38 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280394 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 21280336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 12083641 - 12083706
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  12083641 tgaggcccatccttgaggaaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 12083706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19741224 - 19741289
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19741224 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgtccctg 19741289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 24711143 - 24711208
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24711143 tgaggcccatccttgggggaggcccagcttgtttgagctgtttgcaccccctcagggacgcccctg 24711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 33773964 - 33773900
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  33773964 tgaggcccatccttgagggaggcccagctcatttgag-tgtttgcaccccctcagggacgcccctg 33773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 27579084 - 27579143
Alignment:
Q  42 atccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  27579084 atccttgagggaggcccagctcgtttgagctggttgcacccccttagggacgcccctgct 27579143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 30832668 - 30832734
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  30832668 tgaggcccatccttgagggaggcccagctcatttgagctgtttgca-cccctcaaggacgcccctgct 30832734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 1156018 - 1156083
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||  ||||||||    
T  1156018 tgaggcccatccttaagggagacctagctcgtttgagctgtttgcaccccctcaggagcgcccctg 1156083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 22845356 - 22845411
Alignment:
Q  103 gggatggtagatatctaccaacctccagtttgagagggggtattagcatatgaaga 158  Q
    ||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||    
T  22845356 gggatggtagatatctaccaaccaccagtttgcgagggggtatcaacatatgaaga 22845411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 26621369 - 26621422
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattagcata 152  Q
    ||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||    
T  26621369 gcttgggatggtagataactaccaacctccagcttgcgaggggttattagcata 26621422  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 26727348 - 26727401
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattagcata 152  Q
    ||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||    
T  26727348 gcttgggatggtagataactaccaacctccagcttgcgaggggttattagcata 26727401  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 17353824 - 17353768
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  17353824 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 17353768  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 19987031 - 19986975
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||  ||||||||||||||||||  |||||||||||||||||||| ||||    
T  19987031 tgaggcccataattgagggaggcccagctctgttgagctgtttgcacccccttaggg 19986975  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 27788923 - 27788979
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  27788923 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 27788979  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 235473 - 235519
Alignment:
Q  47 tgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    |||||||||||||||||  || |||||||||||||||||||||||||    
T  235473 tgagggaggcccagctctgttaagctgtttgcaccccctcagggacg 235519  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 20711953 - 20712009
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||| ||||||||    
T  20711953 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcaggg 20712009  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 8095422 - 8095377
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggta 144  Q
    ||||||||||| ||| |||||||||||||||| ||| |||||||||    
T  8095422 gcttgggatggaagacatctaccaacctccagcttgtgagggggta 8095377  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 11081684 - 11081740
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    |||||||||| | | ||||||||| |||||  |||||||||||||||||||| ||||    
T  11081684 tgaggcccatgccttagggaggcctagctccattgagctgtttgcaccccctaaggg 11081740  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 12596430 - 12596495
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596430 tgagggccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 12596495  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 18777019 - 18777084
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcagggacgcccctg 18777084  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 28749646 - 28749582
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccct 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28749646 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagagacgcccct 28749582  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 10955443 - 10955376
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||    
T  10955443 tgaggcccatccttgagggaggcccaactcgtttgagctatttgcaccccctcaaggacgcccctgct 10955376  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 29076997 - 29076925
Alignment:
Q  34 tgaggcccatccttgaggg--aggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgcttgg 104  Q
    |||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||    
T  29076997 tgaggcccatccttgagggggaggccctgctcgtttaagctgtttgcaccccctcaggaacgcctctgtttgg 29076925  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 47985203 - 47985259
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  47985203 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 47985259  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 14236862 - 14236917
Alignment:
Q  103 gggatggtagatatctaccaacctccagtttgagagggggtattagcatatgaaga 158  Q
    ||||||||||||||||||||||| || ||||| |||||||||| | ||||||||||    
T  14236862 gggatggtagatatctaccaaccaccggtttgcgagggggtatcaacatatgaaga 14236917  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 19691949 - 19691906
Alignment:
Q  47 tgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    |||||||||||||||||  |||||||||||||||||||||||||    
T  19691949 tgagggaggcccagctctgttgagctgtttgcaccccctcaggg 19691906  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 48984078 - 48984132
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcag 88  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||||    
T  48984078 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcag 48984132  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 24525934 - 24525975
Alignment:
Q  49 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  24525934 agggaggcccagctctgttgagctgtttgcaccccctcaggg 24525975  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 20091515 - 20091573
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacg 93  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||| ||||||||    
T  20091515 tgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccc-cagggacg 20091573  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 23551306 - 23551359
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 87  Q
    ||||||||||  |||||||||| ||| |||  ||||||||||||||||||||||    
T  23551306 tgaggcccatgattgagggaggtccaactctattgagctgtttgcaccccctca 23551359  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 40357589 - 40357629
Alignment:
Q  56 cccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    ||||||||||||||||||||||||   |||||||||||||||||    
T  40357589 cccagctcgtttgagctgtttgca---cctcagggacgcccctg 40357629  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 25010318 - 25010262
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   ||||||||||||| |||  |||||||||||| ||||||||||||    
T  25010318 tgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcaggg 25010262  T

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Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 181480 - 181433
Alignment:
Q  54 ggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  181480 ggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgct 181433  T

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Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 2306 - 2355
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattag 148  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  2306 gcttgggatggtagatatctaccaacctccagcttgtgggggggtattag 2355  T

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Target: scaffold0102; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 6659 - 6708
Alignment:
Q  99 gcttgggatggtagatatctaccaacctccagtttgagagggggtattag 148  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  6659 gcttgggatggtagatatctaccaacctccagcttgtgggggggtattag 6708  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 106444 - 106388
Alignment:
Q  34 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 90  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||| |||||||    
T  106444 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcaggg 106388  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 4197 - 4149
Alignment:
Q  51 ggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 99  Q
    |||||||||||||  ||||||||||||||||| ||||||| || |||||    
T  4197 ggaggcccagctctgttgagctgtttgcaccctctcagggccggccctg 4149  T

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