View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_36 (Length: 239)
Name: NF8478_low_36
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 34273056 - 34273270
Alignment:
| Q |
8 |
gagactttgggttttatcgattcgtctttagaatatgtttctctgtctcaaaatgcaagcaaataaatcactcttgaatgttgaattagaaagtgagaca |
107 |
Q |
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| T |
34273056 |
gagactatgagttttatcggttcgtctctagaatatgtttttctgtctcaaaatgcaag--aataaatcactcttgaatgttggattagaaagtgagaca |
34273153 |
T |
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| Q |
108 |
aatgaaaacttatattttgttaattgtactcatgaatgttggattagagagtgaaacaaatgaaaatttatgtttttgcttcaacct-aaaacatcagca |
206 |
Q |
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| T |
34273154 |
aatcaaaacttatgttttgtttattgtactcataaatgttggattagaaagtgaaacaaatgaaaacttatgtttttgcttcaacctaaaaacatcatca |
34273253 |
T |
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| Q |
207 |
actctttaggtcatatc |
223 |
Q |
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||||||||||||||||| |
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| T |
34273254 |
actctttaggtcatatc |
34273270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 34271747 - 34271532
Alignment:
| Q |
8 |
gagactttgggttttatcgattcgtctttagaatatgtttctctgtctcaaaatgcaagcaaataaatcactcttgaatgttgaattagaaagtgagaca |
107 |
Q |
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||||||||| |||||||| ||||||| |||||||||||| || ||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| | |
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| T |
34271747 |
gagactttgagttttatcagttcgtctctagaatatgtttttccgtctcaaaatgcaagaaaataaataactcttgaatgttggattggaaagtgagata |
34271648 |
T |
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| Q |
108 |
aatgaaaacttatattttgttaattgtactcatgaatgttggattagagagtgaaacaaatgaaaatttatgtttttgcttcaacct-aaaacatcagca |
206 |
Q |
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| T |
34271647 |
aatcaaatct-atgttttgtttattatactcatgaatgttggattagaaagtgaaacaaatgaaaacttatgtttttgcttcaacctaaaaacatcagca |
34271549 |
T |
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| Q |
207 |
actctttaggtcatatc |
223 |
Q |
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||||||||||||||||| |
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| T |
34271548 |
actctttaggtcatatc |
34271532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 34262973 - 34262828
Alignment:
| Q |
8 |
gagactttgggttttatcgattcgtctttagaatatgtttctctgtctcaaaatgcaagcaaataaatcactcttgaatgttgaattagaaagtgagaca |
107 |
Q |
| |
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||||||||| |||||||| ||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
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| T |
34262973 |
gagactttgaattttatcggttcgtctctagaatatgtttttccgtctcaaaatgcaagaaaataaatcactcttgaatgttggattagaaagtgaggca |
34262874 |
T |
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| Q |
108 |
aatgaaaacttatattttgttaattgtactcatgaatgttggatta |
153 |
Q |
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||| ||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
34262873 |
aatcaaaacttatgttttgtttattgtactcatgaatgttggatta |
34262828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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