View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_4 (Length: 596)
Name: NF8478_low_4
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_4 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 11720 - 11490
Alignment:
| Q |
15 |
atcttgaatagattaacttgaagctaattttaacttatcttcttcacttgtaattgctggaattgtaat---ggtttttattaataatttataacctatc |
111 |
Q |
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| T |
11720 |
atcttgaatagattaacttgaagctaattttaacttatcttcttcacttctaattgctggaattgtaataatggtttttattaataatttataacctatc |
11621 |
T |
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| Q |
112 |
tctcatagcatagcatagcatagccacttatcatcttatagat-agatgtctatatataagtgtgctttagtttttacataatctctcaagttttttaac |
210 |
Q |
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| T |
11620 |
tctcatagcatagcatagcatagccacttattatcttatagattagatgtctatgtataagtgtgctttagtttttacataatctctcaagttttttaac |
11521 |
T |
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| Q |
211 |
gtattgtcttctttgatactcatctcatgtg |
241 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
11520 |
ctattgtcttctttggtactcatctcatgtg |
11490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 243 - 571
Target Start/End: Complemental strand, 10058416 - 10058086
Alignment:
| Q |
243 |
gttagatattattgttattattagttagtagtaagggtactttagaccttttctattctatagtatatatatctcttgtataaccttgtacatatgatgc |
342 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||| | |||||||| |||||||| | || |
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| T |
10058416 |
gttagatataattgttattattagttagtagtaagggtactttagacaattcccattctatagtatatatatgt--tgtataactatgtacatagta-gc |
10058320 |
T |
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| Q |
343 |
tt-tcattttggttaatcaaaccctagcct-cttgcgggttcttcctcttctctgt--gtactgtttctcttcttccctcataatgctatgtt---agat |
435 |
Q |
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| T |
10058319 |
tgctcacttttgttaatgaaaccctagccttcttacgggttcttc---ttctatgttagtgctctttctcttcctcc-tcctaatgctatgctgctagat |
10058224 |
T |
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| Q |
436 |
tgcctatgctaacatggtatca--gagctatggttgattttgcgatttggttttgatttcttctctgatttggttttcttccctctgtttccatctccga |
533 |
Q |
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|| ||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||| |||| |||||| |||| ||||| ||| |
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| T |
10058223 |
tgtctatgttaacatggtatcacagagctatggttgatcttgcaatttggttttgatttcttttctgatttgg-tttcctccctccgttttcatcttcga |
10058125 |
T |
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| Q |
534 |
tgca-catctctgtttccggcgaaacttttcggcgcaat |
571 |
Q |
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| T |
10058124 |
cgcaccacctctatttccggcggaactttccggcgcaat |
10058086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 403 - 571
Target Start/End: Original strand, 46818027 - 46818199
Alignment:
| Q |
403 |
tttctcttcttccctcataatgctatgt---tagattgcctatgctaacatggtatca--gagctatggttgattttgcgatttggttttgatttcttct |
497 |
Q |
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||||||||||||| || |||||||||| ||||||| ||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||| | |
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| T |
46818027 |
tttctcttcttcc-tcctaatgctatgcagctagattgtctatgttaacatggtatcatagagctatggttgatcttgcaatttggttttgatttctttt |
46818125 |
T |
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| Q |
498 |
ctgatttggttttcttccctctgtttccatctccgatgca-catctctgtttccggcgaaacttttcggcgcaat |
571 |
Q |
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| T |
46818126 |
ctgatttgg-tttcctcccttcgttttcatctccgacgcaccacctctgtttccggcggaactttccggcgcaat |
46818199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 10051396 - 10051324
Alignment:
| Q |
242 |
tgttagatattattgttattattagttagtagtaagggtactttagaccttttctattctatagtatatatat |
314 |
Q |
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| T |
10051396 |
tgttagatataattgtgattattagttagtaataagggtactttagacaattcccattctatagtatatatat |
10051324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 46817883 - 46817940
Alignment:
| Q |
257 |
ttattattagttagtagtaagggtactttagaccttttctattctatagtatatatat |
314 |
Q |
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||||||||||||||||||||||||||||||||| || | |||||||||||||||||| |
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| T |
46817883 |
ttattattagttagtagtaagggtactttagacaattcccattctatagtatatatat |
46817940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 46822493 - 46822550
Alignment:
| Q |
257 |
ttattattagttagtagtaagggtactttagaccttttctattctatagtatatatat |
314 |
Q |
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| T |
46822493 |
ttattattagttagtagtaagggtactttagacaattcccattctatagtatatatat |
46822550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 431 - 571
Target Start/End: Complemental strand, 47634109 - 47633969
Alignment:
| Q |
431 |
tagattgcctatgctaacatggtatcagagctatggttgattttgcgatttggttttgatttcttctctgatttggttttcttccctctgtttccatctc |
530 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |||| |||||| |||| |||||| |
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| T |
47634109 |
tagattgtctatgttaacatggtatcagagctatggttgatcttgcaatttggttttgatttcttttctgatttgg-tttcctccctccgttttcatctc |
47634011 |
T |
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| Q |
531 |
cgatgca-catctctgtttccggcgaaacttttcggcgcaat |
571 |
Q |
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| T |
47634010 |
cgacgcaccacctctgtttccggcggaactttccggcgcaat |
47633969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 257 - 571
Target Start/End: Complemental strand, 47940808 - 47940492
Alignment:
| Q |
257 |
ttattattagttagtagtaagggtactttagaccttttctattctatagtatatatatctcttgtataaccttgtacatatgatgcttt---cattttgg |
353 |
Q |
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||||||||||||||||||||||||||||||||| || | |||||||||||||||||| | |||||||| |||||| | | ||| || | | |
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| T |
47940808 |
ttattattagttagtagtaagggtactttagacaattcccattctatagtatatatatgt--tgtataactatgtacaggttagtttttgttcacaattg |
47940711 |
T |
|
| Q |
354 |
ttaatcaaaccctagcct-cttgcgggttcttcctcttctctgt--gtactgtttctcttcttccctcataatgctatgtt---agattgcctatgctaa |
447 |
Q |
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||||| || ||||||||| ||| |||||||||| |||||||| || || ||||||||||||| || |||||||||| | |||||| ||||| ||| |
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| T |
47940710 |
ttaatgaa-ccctagccttcttacgggttcttc---ttctctgtcagtgctctttctcttcttcc-tcctaatgctatgctgctagattgtctatgttaa |
47940616 |
T |
|
| Q |
448 |
catggtatcagagctatggttgattttgcgatttggttttgatttcttctctgatttggttttcttccctctgtttccatctccgatgca-catctctgt |
546 |
Q |
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| T |
47940615 |
catggtatcagagctgtggttgatcttgcaatttggttttgatttcttttttgatttgg-tttcctcccttcgttttcatctccgacacaccacctctgt |
47940517 |
T |
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| Q |
547 |
ttccggcgaaacttttcggcgcaat |
571 |
Q |
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|||||||| |||||| ||||||||| |
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| T |
47940516 |
ttccggcggaactttccggcgcaat |
47940492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 47634252 - 47634180
Alignment:
| Q |
242 |
tgttagatattattgttattattagttagtagtaagggtactttagaccttttctattctatagtatatatat |
314 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||| |
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| T |
47634252 |
tgttagatattattgttattattagttagtaataagggtgctttagacaattctcattctatagtatatatat |
47634180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 47936201 - 47936144
Alignment:
| Q |
257 |
ttattattagttagtagtaagggtactttagaccttttctattctatagtatatatat |
314 |
Q |
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||||||||||||||||||||||||||||||||| || | |||||||||||||||||| |
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| T |
47936201 |
ttattattagttagtagtaagggtactttagacaattcccattctatagtatatatat |
47936144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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