View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8478_low_40 (Length: 226)
Name: NF8478_low_40
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 18840383 - 18840174
Alignment:
| Q |
1 |
tataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18840383 |
tataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgatatgggggctccgccacatggtaagtcttctaaaatggtttatag |
18840284 |
T |
|
| Q |
101 |
ccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatattttcatttgaaatttaaccggtgtatcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18840283 |
ccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatattttcatttgaaatataaccggtgtatcttc |
18840184 |
T |
|
| Q |
201 |
atttgaacac |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
18840183 |
atttgaacac |
18840174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 50011639 - 50011482
Alignment:
| Q |
12 |
tttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatagccccattcctc |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
50011639 |
tttcaggctgaagctaagtttggatatcttcttgaagctcttgacatgggggctccgccacatggtaagtcttctaaaatgatttatagccccattcctc |
50011540 |
T |
|
| Q |
112 |
cctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatat |
170 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50011539 |
cc-ttgtcgataaactggattatcttattagagtagcatttgtctgtgcacaaccatat |
50011482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 18851554 - 18851440
Alignment:
| Q |
1 |
tataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18851554 |
tataatttctttttcaggctgaagcgaagtatggatatcttcttgaagctcttgacatgggggctccgccacatggtaaatcttctaaaatggtttatag |
18851455 |
T |
|
| Q |
101 |
ccccattcctccctt |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18851454 |
ccccattcctccctt |
18851440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 44108698 - 44108530
Alignment:
| Q |
1 |
tataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
44108698 |
tataatttctttttcaggctgaagctaagtttggatatcttcttgaagctctcgacatgggggctccaccacatggtaagtcttctaaaatgatttatag |
44108599 |
T |
|
| Q |
101 |
ccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatat |
170 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44108598 |
ccccattcctccc-ttgtcgataaactggattatcttattagagtagcatttgtctgtgcacaaccatat |
44108530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 51296465 - 51296303
Alignment:
| Q |
1 |
tataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51296465 |
tataaattctttttcaggctgaagcgaagtttggacatcttcttgaagctcttgacatgggggctccgccacatggtaattcttctaaaatggtttatag |
51296366 |
T |
|
| Q |
101 |
ccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatatt |
171 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51296365 |
cccca--------cttgtcgatgaactgaattatctaattagagtagcatttgtctgtgcacaaccatatt |
51296303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University