View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8478_low_43 (Length: 212)

Name: NF8478_low_43
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8478_low_43
NF8478_low_43
[»] chr7 (11 HSPs)
chr7 (17-193)||(23128485-23128661)
chr7 (42-78)||(5409768-5409804)
chr7 (42-77)||(35862037-35862072)
chr7 (42-75)||(18212973-18213006)
chr7 (42-75)||(29763129-29763162)
chr7 (42-75)||(30813883-30813916)
chr7 (42-75)||(38134335-38134368)
chr7 (42-75)||(40131939-40131972)
chr7 (42-78)||(9778591-9778627)
chr7 (42-74)||(11272531-11272563)
chr7 (46-74)||(49107895-49107923)
[»] chr8 (12 HSPs)
chr8 (42-80)||(25566916-25566954)
chr8 (42-75)||(11833936-11833969)
chr8 (42-75)||(36450694-36450727)
chr8 (42-78)||(4673351-4673387)
chr8 (42-76)||(8343053-8343087)
chr8 (42-76)||(8343413-8343447)
chr8 (42-75)||(13436910-13436943)
chr8 (46-75)||(16641909-16641938)
chr8 (42-75)||(18964276-18964309)
chr8 (42-75)||(31514940-31514973)
chr8 (46-78)||(29510230-29510262)
chr8 (48-76)||(38487156-38487184)
[»] chr4 (11 HSPs)
chr4 (36-78)||(3064865-3064907)
chr4 (42-74)||(17425348-17425380)
chr4 (42-77)||(16184917-16184952)
chr4 (42-85)||(18513165-18513208)
chr4 (42-76)||(5775303-5775337)
chr4 (42-75)||(715545-715578)
chr4 (42-75)||(752871-752904)
chr4 (38-79)||(19500783-19500824)
chr4 (42-75)||(23292926-23292959)
chr4 (46-79)||(53381526-53381559)
chr4 (42-74)||(4383452-4383484)
[»] chr1 (12 HSPs)
chr1 (42-80)||(22947816-22947854)
chr1 (42-73)||(1486646-1486677)
chr1 (42-77)||(21365990-21366025)
chr1 (42-76)||(37598917-37598951)
chr1 (42-75)||(22515827-22515860)
chr1 (42-75)||(35702542-35702575)
chr1 (42-75)||(47989594-47989627)
chr1 (41-77)||(2288123-2288159)
chr1 (42-78)||(15765844-15765880)
chr1 (42-78)||(22881564-22881600)
chr1 (42-74)||(28663683-28663715)
chr1 (46-78)||(42325649-42325681)
[»] scaffold0168 (2 HSPs)
scaffold0168 (42-79)||(21374-21411)
scaffold0168 (42-79)||(21245-21282)
[»] chr5 (15 HSPs)
chr5 (46-83)||(2548470-2548507)
chr5 (46-79)||(38464309-38464342)
chr5 (42-78)||(15086564-15086600)
chr5 (42-82)||(36838617-36838657)
chr5 (42-76)||(10298636-10298670)
chr5 (42-76)||(14873608-14873642)
chr5 (42-79)||(6770622-6770659)
chr5 (46-75)||(14674339-14674368)
chr5 (42-75)||(15884063-15884096)
chr5 (42-75)||(17123133-17123166)
chr5 (42-75)||(21576685-21576718)
chr5 (42-75)||(22423764-22423797)
chr5 (42-75)||(35017129-35017162)
chr5 (42-75)||(39698638-39698671)
chr5 (46-78)||(6247700-6247732)
[»] chr3 (11 HSPs)
chr3 (42-75)||(11252062-11252095)
chr3 (42-78)||(28812612-28812648)
chr3 (37-75)||(8842410-8842448)
chr3 (42-75)||(4990912-4990945)
chr3 (42-75)||(20503551-20503584)
chr3 (42-75)||(34185052-34185085)
chr3 (42-75)||(55401161-55401194)
chr3 (46-74)||(5339197-5339225)
chr3 (42-74)||(8789489-8789521)
chr3 (42-78)||(14979235-14979271)
chr3 (42-78)||(40052398-40052434)
[»] chr2 (4 HSPs)
chr2 (42-79)||(37419840-37419877)
chr2 (42-75)||(18420363-18420396)
chr2 (42-75)||(22084756-22084789)
chr2 (42-75)||(26769608-26769641)
[»] chr6 (10 HSPs)
chr6 (46-82)||(8776901-8776937)
chr6 (42-77)||(4878028-4878063)
chr6 (42-77)||(17327588-17327623)
chr6 (35-74)||(17841530-17841569)
chr6 (42-75)||(3209485-3209518)
chr6 (42-75)||(7723199-7723232)
chr6 (42-79)||(8365444-8365481)
chr6 (42-75)||(32839571-32839604)
chr6 (35-75)||(13360313-13360353)
chr6 (42-74)||(17341622-17341654)
[»] scaffold0512 (1 HSPs)
scaffold0512 (45-75)||(4976-5006)
[»] scaffold0475 (1 HSPs)
scaffold0475 (42-76)||(3394-3428)
[»] scaffold0019 (1 HSPs)
scaffold0019 (42-80)||(71822-71860)
[»] scaffold0793 (1 HSPs)
scaffold0793 (42-75)||(4821-4854)
[»] scaffold0027 (1 HSPs)
scaffold0027 (42-75)||(46743-46776)
[»] scaffold0003 (1 HSPs)
scaffold0003 (46-79)||(236910-236943)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-74)||(92908-92940)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 23128661 - 23128485
Alignment:
Q  17 gtgttggtgtcggacatgactgaggcacgcctaatccgaggagtgtctgtgcttcataggttgatactctatttagtgttgttgtagcatttgtttttga 116  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23128661 gtgttggtgtcgaacatgattgaggcacgcctaatccgaggagtgtctgtgcttcataggttgatactctatttagtgttgttgtagcatttgtttttga 23128562  T
Q  117 tgattgcctgaatatgtaaacaagaatgctacaggagtgttagtaactgtggaaccaagactgactagctatgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23128561 tgattgcctgaatatgtaaacaagaatgctacaggagtgttagtaactgtggaaccaagactgactagctatgtaga 23128485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 5409804 - 5409768
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||||||||||||||||||| ||||||||||||||    
T  5409804 cacgcctaatccgaggagtgtccgtgcttcataggtt 5409768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 35862037 - 35862072
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggt 77  Q
    |||||||||||||||||||||| |||||||||||||    
T  35862037 cacgcctaatccgaggagtgtccgtgcttcataggt 35862072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 18213006 - 18212973
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||| ||||||||||||||||||||||||||    
T  18213006 cacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 29763162 - 29763129
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  29763162 cacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 30813883 - 30813916
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  30813883 cacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 38134368 - 38134335
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||| ||||||||||||    
T  38134368 cacgcctaatccgaggagtgtatgtgcttcatag 38134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 40131972 - 40131939
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||| |||||||||||||||||||||||||||||    
T  40131972 cacgtctaatccgaggagtgtctgtgcttcatag 40131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 9778591 - 9778627
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  9778591 cacgcctaatccaaggagtgtccgtgcttcataggtt 9778627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 11272563 - 11272531
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    ||||||||||||||||||| |||||||||||||    
T  11272563 cacgcctaatccgaggagtatctgtgcttcata 11272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 49107895 - 49107923
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||||||||||||||||||||||    
T  49107895 cctaatccgaggagtgtctgtgcttcata 49107923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 25566916 - 25566954
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttga 80  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  25566916 cacgcctaatccgaggagtgtctgtgcttcatagattga 25566954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 11833936 - 11833969
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||||||||||||||||    
T  11833936 cacgcctaatccgaggagtgtctgtgcttcatag 11833969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 36450727 - 36450694
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||||||||||||||||    
T  36450727 cacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 4673387 - 4673351
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4673387 cacgcctaatccaaggagtgtctgtgcttcataggtt 4673351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 8343053 - 8343087
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||| ||||||||||||||||||||    
T  8343053 cacgcctaatccgaagagtgtctgtgcttcatagg 8343087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 8343413 - 8343447
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||| ||||||||||||||||||||    
T  8343413 cacgcctaatccgaagagtgtctgtgcttcatagg 8343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 13436943 - 13436910
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||| |||||||||||||||||||||    
T  13436943 cacgcctaatccaaggagtgtctgtgcttcatag 13436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 16641938 - 16641909
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||||||||||||    
T  16641938 cctaatccgaggagtgtctgtgcttcatag 16641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 18964276 - 18964309
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||| ||||||||||||||||||||||||||    
T  18964276 cacgccttatccgaggagtgtctgtgcttcatag 18964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 31514940 - 31514973
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  31514940 cacgcctaatccgaggagtgtccgtgcttcatag 31514973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 29510262 - 29510230
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||||||||||||||| ||||||||||||||    
T  29510262 cctaatccgaggagtgtccgtgcttcataggtt 29510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 38487184 - 38487156
Alignment:
Q  48 taatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||||||||||||||||||    
T  38487184 taatccgaggagtgtctgtgcttcatagg 38487156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 3064907 - 3064865
Alignment:
Q  36 ctgaggcacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  3064907 ctgagacacgcctaatccgaggagtgtccgtgcttcataggtt 3064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 17425380 - 17425348
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||||||||||||||||||||||||||    
T  17425380 cacgcctaatccgaggagtgtctgtgcttcata 17425348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 16184917 - 16184952
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggt 77  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16184917 cacgcctaatccgaggagtgtttgtgcttcataggt 16184952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 18513208 - 18513165
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttgatactc 85  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||    
T  18513208 cacgcctaatctgaggagtgtccgtgcttcataggttcatactc 18513165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 5775337 - 5775303
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||||||||||| ||||||||||||    
T  5775337 cacgcctaatccgaggagtgtccgtgcttcatagg 5775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 715578 - 715545
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  715578 cacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 752904 - 752871
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  752904 cacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 19500824 - 19500783
Alignment:
Q  38 gaggcacgcctaatccgaggagtgtctgtgcttcataggttg 79  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  19500824 gaggcacgcctaatccaaggagtatccgtgcttcataggttg 19500783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 23292959 - 23292926
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  23292959 cacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 53381559 - 53381526
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggttg 79  Q
    |||||||||||||||||| |||||||||||||||    
T  53381559 cctaatccgaggagtgtccgtgcttcataggttg 53381526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 4383452 - 4383484
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||||||||||||||| ||||||||||    
T  4383452 cacgcctaatccgaggagtgtccgtgcttcata 4383484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 22947816 - 22947854
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttga 80  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22947816 cacgcctaatccgaggagtgtccgtgcttcataggttga 22947854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 1486677 - 1486646
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcat 73  Q
    ||||||||||||||||||||||||||||||||    
T  1486677 cacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 21366025 - 21365990
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggt 77  Q
    |||||||||||||||||||||| |||||||||||||    
T  21366025 cacgcctaatccgaggagtgtccgtgcttcataggt 21365990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 37598917 - 37598951
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||||||||||| ||||||||||||    
T  37598917 cacgcctaatccgaggagtgtccgtgcttcatagg 37598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 22515860 - 22515827
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  22515860 cacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 35702575 - 35702542
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  35702575 cacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 47989594 - 47989627
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  47989594 cacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 2288159 - 2288123
Alignment:
Q  41 gcacgcctaatccgaggagtgtctgtgcttcataggt 77  Q
    |||||||||||||||||| |||| |||||||||||||    
T  2288159 gcacgcctaatccgaggaatgtcagtgcttcataggt 2288123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 15765844 - 15765880
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  15765844 cacgcctaatccgaagagtgtccgtgcttcataggtt 15765880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 22881600 - 22881564
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  22881600 cacgtctaatccgaggagtgtccgtgcttcataggtt 22881564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 28663683 - 28663715
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||| ||||||||||||||||||||||    
T  28663683 cacgcctaattcgaggagtgtctgtgcttcata 28663715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 42325649 - 42325681
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||| ||||||||||||||||||||||||||    
T  42325649 cctaattcgaggagtgtctgtgcttcataggtt 42325681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 21374 - 21411
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttg 79  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21374 cacgcctaatccgagaagtgtctgtgcttcataggttg 21411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 21245 - 21282
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttg 79  Q
    ||||||||||||||||||| || |||||||||||||||    
T  21245 cacgcctaatccgaggagtatccgtgcttcataggttg 21282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 2548470 - 2548507
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggttgatac 83  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2548470 cctaatccgaggagtgtctgtgcttcatagattgatac 2548507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 38464342 - 38464309
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggttg 79  Q
    ||||||||||||||||||||||||||||||||||    
T  38464342 cctaatccgaggagtgtctgtgcttcataggttg 38464309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 15086564 - 15086600
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15086564 cacgcctaatccgaggagtgtctttgcttcataggtt 15086600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 36838617 - 36838657
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttgata 82  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  36838617 cacgcctaatccaaggagtgtctgtgcttcatagattgata 36838657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 10298636 - 10298670
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||||||||||| ||||||||||||    
T  10298636 cacgcctaatccgaggagtgtccgtgcttcatagg 10298670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 14873608 - 14873642
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||||||||||| ||||||||||||    
T  14873608 cacgcctaatccgaggagtgtccgtgcttcatagg 14873642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 6770622 - 6770659
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttg 79  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  6770622 cacgcctaatccgaagagtgtccgtgcttcataggttg 6770659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 14674339 - 14674368
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||||||||||||    
T  14674339 cctaatccgaggagtgtctgtgcttcatag 14674368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 15884063 - 15884096
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||||||| |||||||    
T  15884063 cacgcctaatccgaggagtgtctgtgtttcatag 15884096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 17123133 - 17123166
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  17123133 cacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 21576718 - 21576685
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  21576718 cacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 22423797 - 22423764
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  22423797 cacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 35017129 - 35017162
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  35017129 cacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 39698638 - 39698671
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  39698638 cacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 6247700 - 6247732
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggtt 78  Q
    ||||||||||| |||||||||||||||||||||    
T  6247700 cctaatccgagaagtgtctgtgcttcataggtt 6247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 11252062 - 11252095
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||||||||||||||||    
T  11252062 cacgcctaatccgaggagtgtctgtgcttcatag 11252095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 28812612 - 28812648
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    ||||||||||||||||||||||||||| |||||||||    
T  28812612 cacgcctaatccgaggagtgtctgtgcctcataggtt 28812648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 8842410 - 8842448
Alignment:
Q  37 tgaggcacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  8842410 tgagacacgcctaatccgaggagtgtccgtgcttcatag 8842448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 4990945 - 4990912
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  4990945 cacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 20503551 - 20503584
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  20503551 cacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 34185085 - 34185052
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  34185085 cacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 55401161 - 55401194
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  55401161 cacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 5339197 - 5339225
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||||||||||||||||||||||    
T  5339197 cctaatccgaggagtgtctgtgcttcata 5339225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 8789521 - 8789489
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||||||||||||||| ||||||||||    
T  8789521 cacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 14979235 - 14979271
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  14979235 cacgcctaacccgaggagtgtccgtgcttcataggtt 14979271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 40052398 - 40052434
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggtt 78  Q
    |||||||||||||||||||||  ||||||||||||||    
T  40052398 cacgcctaatccgaggagtgttcgtgcttcataggtt 40052434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 37419840 - 37419877
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttg 79  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37419840 cacgcctaatccgaggagtgtccgtgcttcataggttg 37419877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 18420396 - 18420363
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||| ||||||||||||||||||    
T  18420396 cacgcctaatccgagaagtgtctgtgcttcatag 18420363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 22084789 - 22084756
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||| |||||||||||||||||||    
T  22084789 cacgcctaatccgatgagtgtctgtgcttcatag 22084756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 26769608 - 26769641
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  26769608 cacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 8776937 - 8776901
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggttgata 82  Q
    |||||||||||||||||| ||||||||||||||||||    
T  8776937 cctaatccgaggagtgtccgtgcttcataggttgata 8776901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 4878028 - 4878063
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggt 77  Q
    |||||||||||||||||||||| |||||||||||||    
T  4878028 cacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 17327623 - 17327588
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggt 77  Q
    |||||||||||||||||||||| |||||||||||||    
T  17327623 cacgcctaatccgaggagtgtccgtgcttcataggt 17327588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 17841569 - 17841530
Alignment:
Q  35 actgaggcacgcctaatccgaggagtgtctgtgcttcata 74  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  17841569 actgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 3209485 - 3209518
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||||||||| ||||||||||||    
T  3209485 cacgcctaatccgaggagtgtttgtgcttcatag 3209518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 7723232 - 7723199
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  7723232 cacgcctaatccgaggagtgtccgtgcttcatag 7723199  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 8365481 - 8365444
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttg 79  Q
    ||||||||||||||||||| || |||||||||||||||    
T  8365481 cacgcctaatccgaggagtctccgtgcttcataggttg 8365444  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 32839604 - 32839571
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    ||||||||||||||| ||||||||||||||||||    
T  32839604 cacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 13360353 - 13360313
Alignment:
Q  35 actgaggcacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||| |||||||||||||| ||||||| |||||||||||    
T  13360353 actgagacacgcctaatccgaagagtgtccgtgcttcatag 13360313  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 17341654 - 17341622
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    ||||||||||||||||||||| |||||||||||    
T  17341654 cacgcctaatccgaggagtgtttgtgcttcata 17341622  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 5006 - 4976
Alignment:
Q  45 gcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||||||||||||    
T  5006 gcctaatccgaggagtgtctgtgcttcatag 4976  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 3394 - 3428
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatagg 76  Q
    |||||||||||||||||||||| ||||||||||||    
T  3394 cacgcctaatccgaggagtgtccgtgcttcatagg 3428  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 71822 - 71860
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcataggttga 80  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  71822 cacgactaatccgaggagtgtcggtgcttcataggttga 71860  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 4854 - 4821
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  4854 cacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 46743 - 46776
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcatag 75  Q
    |||||||||||||||||||||| |||||||||||    
T  46743 cacgcctaatccgaggagtgtccgtgcttcatag 46776  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 236943 - 236910
Alignment:
Q  46 cctaatccgaggagtgtctgtgcttcataggttg 79  Q
    ||||||| ||||||||||||||||||||||||||    
T  236943 cctaatctgaggagtgtctgtgcttcataggttg 236910  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 92908 - 92940
Alignment:
Q  42 cacgcctaatccgaggagtgtctgtgcttcata 74  Q
    |||||||||||||||||||||| ||||||||||    
T  92908 cacgcctaatccgaggagtgtccgtgcttcata 92940  T

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