View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8478_low_6 (Length: 540)
Name: NF8478_low_6
Description: NF8478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8478_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 21 - 529
Target Start/End: Complemental strand, 6855956 - 6855462
Alignment:
| Q |
21 |
atcactaagaataaacttcatcatgtccccaataaacaatataagcatatatttcaacccaaaatcaaaaccctgtttggcctaccagcaacacaccact |
120 |
Q |
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| T |
6855956 |
atcactaagaataaacttcattatgtccccaataaacaata--agcatatatttcaacccaaaatcaaaaccctgtttggcctaccagcaacacaccact |
6855859 |
T |
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| Q |
121 |
attggcacatgaaatcaaagtggaaaatttcaagacccaaaatagagtggatttatgaacataaactcatggtcaatatgaaatgtcaatcaaattcata |
220 |
Q |
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| T |
6855858 |
attggcacatgaaatcaaagtggaaaatttcaagacccaaaatagagtggatttatgaacataaactcatggtcaatatgaaatgtcaattaaa------ |
6855765 |
T |
|
| Q |
221 |
atcaaaaccaaacagagattgaaataggtttgaaaagagagaggaattgaaaagagtttactaataaatatagacactctaatttaaatgagttagactc |
320 |
Q |
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| T |
6855764 |
------accaaacagagattgaaataggtttgaaaagagagaggaattgaaaagagtttactgataaatatagacactctaatttaaatgagttagactc |
6855671 |
T |
|
| Q |
321 |
gacataaacattaaatatgatagcagagtttatcgatttgggtcgttgattagattatccataagttttataatgataagttgcactcaataattaatgt |
420 |
Q |
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| T |
6855670 |
gacataaacattaaatatgatagcagagtttatcgatttgggtcgttgattagattatccataagttttataatgataagttgtactcaataattaatgt |
6855571 |
T |
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| Q |
421 |
atttggtttataatacagattagatataatagttattcaatgaataannnnnnnnctttcttatatacaagaccggattatatagtatcaaataattatg |
520 |
Q |
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| T |
6855570 |
atttggtttataatatagattagatataatagttattcaataaataaataaataaattgcttatatacaagaccggattatatagtatcaaataattatg |
6855471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 6862422 - 6862260
Alignment:
| Q |
69 |
atatttcaacccaaaatcaaaaccctgtttggcctaccagcaacacaccactattggcacatgaaatcaaagtggaaaatttcaagacccaaaatagagt |
168 |
Q |
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||||||||||||||||||||| || | | ||| | |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
6862422 |
atatttcaacccaaaatcaaacccttctctggtccaccagcaacacatgactattggcacatgaaatcaaagtggaatttttcaagatacaaaatagagt |
6862323 |
T |
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| Q |
169 |
ggatttatgaacataaactcatggtcaatatgaaatgtcaatcaaattcataatcaaaaccaa |
231 |
Q |
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|| || ||||| |||||| |||||| ||||||||||||||||| || || |||||||||||| |
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| T |
6862322 |
gggttgatgaatataaaccaatggtcgatatgaaatgtcaatcagatccaaaatcaaaaccaa |
6862260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 48289997 - 48290045
Alignment:
| Q |
409 |
aataattaatgtatttggtttataatacagattagatataatagttatt |
457 |
Q |
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| T |
48289997 |
aataattaatgtatttggtttataatattgatgagatatattagttatt |
48290045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 10614571 - 10614607
Alignment:
| Q |
410 |
ataattaatgtatttggtttataatacagattagata |
446 |
Q |
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| T |
10614571 |
ataattaatgtatttggtttttaatatagattagata |
10614607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 437
Target Start/End: Original strand, 52768762 - 52768790
Alignment:
| Q |
409 |
aataattaatgtatttggtttataataca |
437 |
Q |
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| T |
52768762 |
aataattaatgtatttggtttataataca |
52768790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 13865781 - 13865837
Alignment:
| Q |
409 |
aataattaatgtatttggtttataatacagattagatataatagttattcaatgaat |
465 |
Q |
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||||||||||||||| ||||||||| |||| | ||| |||||||||||||||||| |
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| T |
13865781 |
aataattaatgtattgactttataatatagatcaaatacaatagttattcaatgaat |
13865837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 39514984 - 39515040
Alignment:
| Q |
409 |
aataattaatgtatttggtttataatacagattagatataatagttattcaatgaat |
465 |
Q |
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||||| |||||||| |||||||||||| | || ||||| |||||||||| ||||||| |
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| T |
39514984 |
aataactaatgtatctggtttataatatatatcagatacaatagttatttaatgaat |
39515040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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