View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_high_1 (Length: 930)
Name: NF8479_1D_high_1
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_high_1 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 894; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 894; E-Value: 0
Query Start/End: Original strand, 21 - 930
Target Start/End: Original strand, 24493525 - 24494434
Alignment:
| Q |
21 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagtatttgttggtcacaaaacatccttta |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493525 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagtatttgttggtcacaaaacatccttta |
24493624 |
T |
|
| Q |
121 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493625 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggtgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
24493724 |
T |
|
| Q |
221 |
cttgggatctagttccgaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
320 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493725 |
cttgggatctagttcctaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
24493824 |
T |
|
| Q |
321 |
ggcacgtctagtcgcgaaaggatttcatcaacgtcctggactagattatgatcaaacattcagtcctgtgattaagccttcaacagttcggttggttctt |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493825 |
ggcacgtctagtcgcgaaaggatttcatcaacgtcctggactagattatgatcaaacattcagtcctgtgattaagccttcaacagttcggttggttctt |
24493924 |
T |
|
| Q |
421 |
acattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccac |
520 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24493925 |
acattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaattgtatacatgcaacaaccac |
24494024 |
T |
|
| Q |
521 |
cgggatttcatcatccagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttaca |
620 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494025 |
cgggatttcatcatccagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttaca |
24494124 |
T |
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| Q |
621 |
ttctttcttactctcctatgggtttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgtt |
720 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494125 |
ttctttcttactctcctatgggtttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgtt |
24494224 |
T |
|
| Q |
721 |
gatgatattttaattacaggcaacaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcact |
820 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494225 |
gatgatattttaattactggcaacaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcact |
24494324 |
T |
|
| Q |
821 |
tctttcttggtgttgaagtcattcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgc |
920 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494325 |
tctttcttggtgttgaagtcattcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgc |
24494424 |
T |
|
| Q |
921 |
aaagattgtc |
930 |
Q |
| |
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|||||||||| |
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| T |
24494425 |
aaagattgtc |
24494434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 762; Significance: 0; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 121 - 930
Target Start/End: Original strand, 92975 - 93784
Alignment:
| Q |
121 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92975 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggagtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
93074 |
T |
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| Q |
221 |
cttgggatctagttccgaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
320 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
93075 |
cttgggatctagttccaaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgacagatacaa |
93174 |
T |
|
| Q |
321 |
ggcacgtctagtcgcgaaaggatttcatcaacgtcctggactagattatgatcaaacattcagtcctgtgattaagccttcaacagttcggttggttctt |
420 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
93175 |
ggcacgtctagtcgcgaaaggatttcatcaatgtcatggactagattatgatcaaacattcagtcctgcgattaagccttcaacagttcggttggttctt |
93274 |
T |
|
| Q |
421 |
acattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccac |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93275 |
acattggccattcaacaacgctggcacattcaccagttggatgtaaacaatgtgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccac |
93374 |
T |
|
| Q |
521 |
cgggatttcatcatccagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttaca |
620 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
93375 |
caggatttcatcatctagattaccctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggttcaacaccttaca |
93474 |
T |
|
| Q |
621 |
ttctttcttactctcctatgggtttgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgtt |
720 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93475 |
ttctttcttactctcctatggatttgtcaattcaaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgtt |
93574 |
T |
|
| Q |
721 |
gatgatattttaattacaggcaacaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcact |
820 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93575 |
gatgatattttaattacaggcaacaacaaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcact |
93674 |
T |
|
| Q |
821 |
tctttcttggtgttgaagtcattcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgc |
920 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93675 |
tctttcttggtgttgaagtcattcctactactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgc |
93774 |
T |
|
| Q |
921 |
aaagattgtc |
930 |
Q |
| |
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|||||||||| |
|
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| T |
93775 |
aaagattgtc |
93784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 92890 - 92951
Alignment:
| Q |
21 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagc |
82 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
92890 |
atcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataacatacacaagc |
92951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 180
Target Start/End: Original strand, 92945 - 92976
Alignment:
| Q |
149 |
cacaagcaatggcttcttctgaatggcgtgcc |
180 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92945 |
cacaagcaatggcttcttctgaatggcgtgcc |
92976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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