View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_low_13 (Length: 258)
Name: NF8479_1D_low_13
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 45173600 - 45173355
Alignment:
| Q |
1 |
tgtcggttgcaatatctacacaatttcttgctacttgatccaaaataacctgaaagatagttcttcgattaattgaatgaaaaaattatttattttttaa |
100 |
Q |
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| T |
45173600 |
tgtcggttgtaatatctacacaatttcttgctacttgatccaaaataacctgaaagatagttcttcgattaattgaatgaaaaaattatttattttttaa |
45173501 |
T |
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| Q |
101 |
ccccggaccttgcttatgtattgttcccataaactgaactaagcttacaagaactatataatcgaaaggaaaacaaaacaagtttgagaagtagcattaa |
200 |
Q |
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| T |
45173500 |
ccccggaccttgcttatgtattgttcccacgaactgagctaagcttacaagaactatataattgaaaggaaaacaaaacaagtttgagacgtagcattaa |
45173401 |
T |
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| Q |
201 |
ttactcttttgtgttcggactgaaaaaacttcaggcactgcagaat |
246 |
Q |
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| T |
45173400 |
ttactcttttgtgttcggactgaaaaaacttcaggcactgcagaat |
45173355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 48417179 - 48417237
Alignment:
| Q |
6 |
gttgcaatatctacacaatttcttgctacttgatccaaaataacctgaaagatagttct |
64 |
Q |
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|||| |||||| ||||||||||||||||||| |||||| |||| |||||| | |||||| |
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| T |
48417179 |
gttgaaatatcaacacaatttcttgctacttcatccaagataatctgaaacaaagttct |
48417237 |
T |
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