View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_1D_low_15 (Length: 256)

Name: NF8479_1D_low_15
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_1D_low_15
NF8479_1D_low_15
[»] chr7 (3 HSPs)
chr7 (1-256)||(3437094-3437349)
chr7 (31-156)||(14798952-14799077)
chr7 (31-156)||(15245944-15246069)
[»] chr3 (3 HSPs)
chr3 (1-254)||(46240130-46240383)
chr3 (1-252)||(23541524-23541775)
chr3 (80-253)||(30038134-30038307)
[»] chr5 (1 HSPs)
chr5 (77-253)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (95-253)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (77-253)||(6869027-6869201)
chr4 (98-253)||(4497222-4497377)
chr4 (31-144)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (98-253)||(18134-18289)
[»] chr6 (1 HSPs)
chr6 (98-253)||(24676042-24676197)
[»] scaffold0140 (1 HSPs)
scaffold0140 (32-132)||(40053-40153)
[»] chr1 (1 HSPs)
chr1 (150-253)||(36915336-36915439)
[»] scaffold0121 (1 HSPs)
scaffold0121 (31-144)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (31-144)||(18131561-18131674)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3437349 - 3437094
Alignment:
Q  1 tgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgct 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3437349 tgatggatgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgct 3437250  T
Q  101 gttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437249 gttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttgg 3437150  T
Q  201 atgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437149 atgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagt 3437094  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 14799077 - 14798952
Alignment:
Q  31 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 130  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  14799077 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 14798978  T
Q  131 cctcttgcatttggcattgttgaaac 156  Q
    ||| | || |||||  ||||||||||    
T  14798977 cctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 15246069 - 15245944
Alignment:
Q  31 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 130  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  15246069 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 15245970  T
Q  131 cctcttgcatttggcattgttgaaac 156  Q
    ||| | || |||||  ||||||||||    
T  15245969 cctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 46240130 - 46240383
Alignment:
Q  1 tgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgct 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  46240130 tgatggttgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgct 46240229  T
Q  101 gttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240230 gttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttgg 46240329  T
Q  201 atgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240330 atgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa 46240383  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 23541524 - 23541775
Alignment:
Q  1 tgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgct 100  Q
    ||||||||| || ||||| || |  ||||| ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || || | |    
T  23541524 tgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagtt 23541623  T
Q  101 gttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttgg 200  Q
    |||||||| |||||||||||||| || |||||  | |||||||| || || |||||  |||| |||| ||||||||| |||||||||||| |  |  |||    
T  23541624 gttggtagggacccaaatgaccaatattttccattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatgg 23541723  T
Q  201 atgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt 252  Q
    |||||||||| |  ||||  |||||||| |||||||||||||| ||||||||    
T  23541724 atgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt 23541775  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
Q  80 gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt 179  Q
    |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||||| |    
T  30038307 gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat 30038208  T
Q  180 ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    |||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038207 ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 253
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
Q  77 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 176  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  29878233 tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 29878332  T
Q  177 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    | ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878333 aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 253
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
Q  95 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 194  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  3921357 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 3921258  T
Q  195 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    || |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921257 tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 253
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
Q  77 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 176  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  177 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    | ||||||||| |||||||| |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869127 aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
Q  98 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 197  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||||||||||| ||||| |||||| || ||     
T  4497377 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga 4497278  T
Q  198 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497277 tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
Q  31 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 130  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||    
T  11318404 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt 11318305  T
Q  131 cctcttgcatttgg 144  Q
    ||| | ||||||||    
T  11318304 cctttagcatttgg 11318291  T

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Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 18134 - 18289
Alignment:
Q  98 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 197  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||||||||||| ||||| |||||| || ||     
T  18134 gctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga 18233  T
Q  198 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18234 tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 24676197 - 24676042
Alignment:
Q  98 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 197  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||||||||||| ||||| |||||| || ||     
T  24676197 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga 24676098  T
Q  198 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 253  Q
    || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676097 tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  32 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 131  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  132 c 132  Q
    |    
T  40053 c 40053  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  150 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 249  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  250 ggta 253  Q
    ||||    
T  36915436 ggta 36915439  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 43494 - 43607
Alignment:
Q  31 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 130  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  43494 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 43593  T
Q  131 cctcttgcatttgg 144  Q
    ||| | ||||||||    
T  43594 cctttagcatttgg 43607  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
Q  31 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 130  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  18131674 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 18131575  T
Q  131 cctcttgcatttgg 144  Q
    ||| | ||||||||    
T  18131574 cctttagcatttgg 18131561  T

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