View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8479_1D_low_16 (Length: 252)
Name: NF8479_1D_low_16
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8479_1D_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 37202830 - 37202586
Alignment:
| Q |
8 |
gaatttgctaataatatatatagttttccatttccaggcacaagaattccttgaaactcgttctgaacaacacaactaaaaacgaaaaccatagcaattg |
107 |
Q |
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| T |
37202830 |
gaatttgctaataatatatatagttttccatttccaggcacaagaattccttgaaactcgttctgaacaacacaactaaaaacgaaaaccatagcaattg |
37202731 |
T |
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| Q |
108 |
attcaattttcccgctaaatttcaagaagnnnnnnnnnnnnnnnntgtaaacaaatttgcatgcctgtttatactgcaactcaattgtataggaaagtag |
207 |
Q |
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| T |
37202730 |
attcaattttcccgctaaatttcaagaagaaaagaaaaacaaaaatgtaaacaaatttgcatgcctgtttatactgcaactcaattgtataggaaagtag |
37202631 |
T |
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| Q |
208 |
aatcgggcttatttctcccgtctccggtcgcgaaacggagacaat |
252 |
Q |
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| T |
37202630 |
aatcgggcttatttctcccgtctccggtcgcgaaacggagacaat |
37202586 |
T |
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