View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8479_1D_low_2 (Length: 521)

Name: NF8479_1D_low_2
Description: NF8479_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8479_1D_low_2
NF8479_1D_low_2
[»] chr7 (4 HSPs)
chr7 (23-322)||(32709829-32710128)
chr7 (22-322)||(32718428-32718728)
chr7 (22-220)||(32715050-32715248)
chr7 (400-498)||(32710206-32710304)
[»] chr6 (3 HSPs)
chr6 (23-226)||(10379629-10379832)
chr6 (26-225)||(10411401-10411600)
chr6 (23-61)||(33450452-33450490)
[»] chr8 (4 HSPs)
chr8 (29-90)||(35018084-35018145)
chr8 (27-79)||(33811089-33811141)
chr8 (41-93)||(42991408-42991460)
chr8 (27-95)||(43347670-43347738)
[»] chr3 (2 HSPs)
chr3 (29-90)||(38214048-38214109)
chr3 (29-90)||(38218267-38218328)
[»] chr4 (9 HSPs)
chr4 (27-79)||(53488672-53488724)
chr4 (27-81)||(15796823-15796877)
chr4 (29-87)||(53493033-53493091)
chr4 (29-87)||(53499325-53499383)
chr4 (42-71)||(40309016-40309045)
chr4 (42-71)||(40318483-40318512)
chr4 (42-71)||(40328557-40328586)
chr4 (27-60)||(53495417-53495450)
chr4 (23-79)||(53502441-53502497)
[»] chr1 (1 HSPs)
chr1 (27-79)||(47495936-47495988)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 32709829 - 32710128
Alignment:
Q  23 agtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709829 agtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattg 32709928  T
Q  123 atggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709929 atggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaa 32710028  T
Q  223 aaggataaagtgggttcgtaagaaatttaccatttataattactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710029 aaggataaagtgggttcgtaagaaatttaccatttataattactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac 32710128  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 32718428 - 32718728
Alignment:
Q  22 cagtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacatt 121  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  32718428 cagtttatggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcaccattcatagcaggttacaaaagtttccacatt 32718527  T
Q  122 gatggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatgga 221  Q
    |||||||||||| | || |||||||||||||  ||||||| |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||||     
T  32718528 gatggttgtgaatcatctgttaatgcaaagttttgtgcaacacaaggtaaaagatggtgggatcaacctgaatttcgtgatcttgatgctgctcaatggc 32718627  T
Q  222 aaaggataaagtgggttcgtaagaaatttaccatttataattactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtga 321  Q
      ||  |||  ||||| ||  | ||||  ||||||||||| || || || ||||| | |||||| ||||| || || |||||||| | ||||||||||||    
T  32718628 gtagactaagatgggtgcgccaaaaatacaccatttataactattgcaccgataggaaacgtttgcctcaaattccacctgaatgcaaaagagaccgtga 32718727  T
Q  322 c 322  Q
    |    
T  32718728 c 32718728  T

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Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 32715050 - 32715248
Alignment:
Q  22 cagtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacatt 121  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||| | || ||||||    
T  32715050 cagtttatggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcaccattcatagcaggctacaaaggcttccacatt 32715149  T
Q  122 gatggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatgg 220  Q
    |||||||||||| | || |||||||||||||  ||||||| |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  32715150 gatggttgtgaatcatctgttaatgcaaagttttgtgcaacacaaggtaaaagatggtgggatcaacctgaatttcgtgatcttgatgctgctcaatgg 32715248  T

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Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 32710206 - 32710304
Alignment:
Q  400 ccaccgtatattactcgaactatgtaataaggaattgaggttgaacccagtggagcctctatgtaatcttcaatctatattgattggtcaatttcaatg 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710206 ccaccgtatattactcgaactatgtaataaggaattgaggttgaacccagtggagcctctatgtaatcttcaatctatattgattggtcaatttcaatg 32710304  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 10379832 - 10379629
Alignment:
Q  23 agtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattg 122  Q
    |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||   ||||||| | || || ||||    
T  10379832 agtttatggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcacccttcatagcctcttacaaagggttccatattg 10379733  T
Q  123 atggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaa 222  Q
    |||| |||||| | || || |||||||| |  ||||  | |||||| | || ||||||| ||| ||||||||||| ||||||||||| |||||||||| |    
T  10379732 atgggtgtgaagcttctgtgaatgcaaaattttgtgacacacaaggaaaaagatggtgggatcaacctgaatttcatgaccttgatgttgctcaatggca 10379633  T
Q  223 aagg 226  Q
    ||||    
T  10379632 aagg 10379629  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 10411401 - 10411600
Alignment:
Q  26 ttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattgatg 125  Q
    ||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||||||||| ||||||||    |||||| | ||||| || ||||    
T  10411401 ttatggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcacccttcatagcctcatacaaagggtttcatatcgatg 10411500  T
Q  126 gttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaag 225  Q
    |||||||| | || || |||||||| |  ||||  | |||||| | || ||||||| ||| |||||| |||| ||| ||||||| |||||||||| ||||    
T  10411501 gttgtgaagcttctgtgaatgcaaaattttgtgacacacaaggaaaaagatggtgggatcaacctgagtttcatgatcttgatgttgctcaatggcaaag 10411600  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 33450452 - 33450490
Alignment:
Q  23 agtttatggaatgcagatgattgggcaacaagaggtgga 61  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33450452 agtttatggaatgcagataattgggccacaagaggtgga 33450490  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 35018084 - 35018145
Alignment:
Q  29 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 90  Q
    |||||||| ||||||||||| |||||||||||||| | |||||| |||||||||||||||||    
T  35018084 tggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcacc 35018145  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 33811141 - 33811089
Alignment:
Q  27 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 79  Q
    |||||||||||||||||||||| |||||||||||| | || |||||| |||||    
T  33811141 tatggaatgcagatgattgggctacaagaggtggacttgaaaaaacaaattgg 33811089  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 42991408 - 42991460
Alignment:
Q  41 gattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccatt 93  Q
    |||||||| ||||||||||| || | |||||| ||||||||||||||||||||    
T  42991408 gattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 42991460  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 43347670 - 43347738
Alignment:
Q  27 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattca 95  Q
    |||||||||||||| | |||||||||||||| ||| | | |||||| ||||||  ||||||||||||||    
T  43347670 tatggaatgcagataactgggcaacaagaggcggactcgtgaaaaccgattggagcaaagcaccattca 43347738  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 38214109 - 38214048
Alignment:
Q  29 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 90  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  38214109 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 38214048  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 38218328 - 38218267
Alignment:
Q  29 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 90  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  38218328 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 38218267  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 53488724 - 53488672
Alignment:
Q  27 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 79  Q
    |||||||||| |||||||||||||||||||||||  | | |||||||||||||    
T  53488724 tatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 15796823 - 15796877
Alignment:
Q  27 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtc 81  Q
    ||||||||||||||||||||||||||  ||| |||  || |||||||||||||||    
T  15796823 tatggaatgcagatgattgggcaacacaaggaggaagagtgaaaacagattggtc 15796877  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 53493033 - 53493091
Alignment:
Q  29 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagc 87  Q
    |||||||| |||||||||||||||||||| ||| | |  || |||||||||||||||||    
T  53493033 tggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc 53493091  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 53499325 - 53499383
Alignment:
Q  29 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagc 87  Q
    |||||||| |||||||||||||||||||| ||| | |  || |||||||||||||||||    
T  53499325 tggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc 53499383  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 40309045 - 40309016
Alignment:
Q  42 attgggcaacaagaggtggattagagaaaa 71  Q
    ||||||||||||||||||||||||||||||    
T  40309045 attgggcaacaagaggtggattagagaaaa 40309016  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 40318512 - 40318483
Alignment:
Q  42 attgggcaacaagaggtggattagagaaaa 71  Q
    ||||||||||||||||||||||||||||||    
T  40318512 attgggcaacaagaggtggattagagaaaa 40318483  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 40328586 - 40328557
Alignment:
Q  42 attgggcaacaagaggtggattagagaaaa 71  Q
    ||||||||||||||||||||||||||||||    
T  40328586 attgggcaacaagaggtggattagagaaaa 40328557  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 53495417 - 53495450
Alignment:
Q  27 tatggaatgcagatgattgggcaacaagaggtgg 60  Q
    |||||||||| |||||||||||||||||||||||    
T  53495417 tatggaatgctgatgattgggcaacaagaggtgg 53495450  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 53502441 - 53502497
Alignment:
Q  23 agtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 79  Q
    ||||| |||||||||||| | |||||||||||||||||| |||  || |||||||||    
T  53502441 agtttgtggaatgcagataactgggcaacaagaggtggactagtcaagacagattgg 53502497  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 47495936 - 47495988
Alignment:
Q  27 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 79  Q
    |||||||||||||||||||||| |||||||||||| | || |||||| |||||    
T  47495936 tatggaatgcagatgattgggctacaagaggtggacttgaaaaaacaaattgg 47495988  T

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